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Python software for processing CRAC and CLIP type data. Compatible with Python 2 and 3.

Generic configuration for running Nextflow pipelines on Eddie.

Introduction to Python aimed for beginners

Contains ruffus pipelines for running the entire single-end or paired-end CRAC pipelines.

This is a repo for codes to simulate trans-grabbing loop extrusion factors (developed by Andrea Bonato)

A dummy project for the Snakemake tutorial

Here you will find the c++ codes and LAMMPS scripts to run simulations of the topological relaxation of bead-spring polymers (which are initially knotted) by the action of a simulated TopoII protein.

Ab Initio Augmented Structure Solving Engine

Hybrid methodology combining Empirical Potential-based Structure Refinement (EPSR) fitting of total scattering data with first-principles quantum mechanical calculations (Density Functional Theory).