diff --git a/modules/local/ega/encrypt/main.nf b/modules/local/ega/encrypt/main.nf index 657ada3aa1ff6ddb3d50bdd9dbd4c2e4a84d6635..25b9f142c22bb8addc3e7790e7dfef1e517ae4d1 100644 --- a/modules/local/ega/encrypt/main.nf +++ b/modules/local/ega/encrypt/main.nf @@ -4,6 +4,7 @@ */ process EGA_ENCRYPT { tag "$sample" + conda "${moduleDir}/environment.yml" input: tuple val(sample), path(reads) diff --git a/nextflow.config b/nextflow.config index 1dcc4e64c6c2f246cc8589fd6c5c02fe90bc5794..75513aeeaab3903f6f8c7d1bf1bd3aec57098684 100644 --- a/nextflow.config +++ b/nextflow.config @@ -38,7 +38,7 @@ process { publishDir = [ path: { params.outdir }, - mode: 'copy', + mode: 'symlink', pattern: '*.{gpg,md5}', enabled: params.ega_user == null || params.ega_user == '' ]