From 06de348072890343ee3c5a15a8cb36b3e922eb7c Mon Sep 17 00:00:00 2001
From: ameyner2 <alison.meynert@ed.ac.uk>
Date: Tue, 7 Sep 2021 16:16:29 +0100
Subject: [PATCH] 19258 run notes

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 docs/run-notes/19258_run_notes.md | 21 +++++++++++++++++++++
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 create mode 100644 docs/run-notes/19258_run_notes.md

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+# Trio whole exome batch 19285 (EdGe)
+
+* The urgent family is 438158.
+* We know that sample 129421 (proband from family 436427) is going to fail – there was an issue during set up for this one.
+* Family 438023 – Quad, for shared analysis between two sibs and trio analysis per sib (129760 and 129850).
+
+Duos/singleton – for Congenica only
+* 435163 (duo)
+* 436090 (duo)
+* 436525 (singleton)
+
+# QC
+
+* Pedigree check ok
+* Samples with slightly low coverage:
+  * 128940_435163	43X
+  * 128993_429270	47X
+  * 126656_429218   48X
+* Contamination check ok
+* Sample 129421 was not delivered - don't analyze family 436427, parents QC'd ok
+* Sequencing QC check ok
-- 
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