From 08cfee1a9b325e1e914f5618263d5e9d8ef7874b Mon Sep 17 00:00:00 2001
From: not populated not populated <ameynert@sdf-cs1.eidf.epcc.ed.ac.uk>
Date: Thu, 30 Sep 2021 12:50:08 +0100
Subject: [PATCH] Ignore unassigned reads from file_list.tsv
---
trio_whole_exome_create_parameter_files.pl | 1 +
1 file changed, 1 insertion(+)
diff --git a/trio_whole_exome_create_parameter_files.pl b/trio_whole_exome_create_parameter_files.pl
index 2092253..c7b3434 100644
--- a/trio_whole_exome_create_parameter_files.pl
+++ b/trio_whole_exome_create_parameter_files.pl
@@ -53,6 +53,7 @@ my %family;
while (my $line = <>)
{
next if ($line =~ /^File/);
+ next if ($line =~ /unassigned/);
chomp $line;
my @tokens = split(/\t/, $line);
--
GitLab