From 1532172eecda9138463041a1ba39170c034d1d46 Mon Sep 17 00:00:00 2001
From: ameyner2 <alison.meynert@ed.ac.uk>
Date: Wed, 18 Aug 2021 16:31:19 +0100
Subject: [PATCH] Fixed file paths

---
 docs/Software_installation_ultra2.md | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/docs/Software_installation_ultra2.md b/docs/Software_installation_ultra2.md
index a3b1972..0081b0d 100644
--- a/docs/Software_installation_ultra2.md
+++ b/docs/Software_installation_ultra2.md
@@ -106,10 +106,10 @@ VerifyBamID \
   --Reference ../../bcbio/genomes/Hsapiens/hg38/seq/hg38.fa
 
 # rename the files to the correct format
-mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.chr.biallelic.snps.minAF0.01.vcf.gz.bed 1000g.phase3.100k.b38.vcf.gz.dat.bed
-mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.chr.biallelic.snps.minAF0.01.vcf.gz.mu 1000g.phase3.100k.b38.vcf.gz.dat.mu
-mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.chr.biallelic.snps.minAF0.01.vcf.gz.PC 1000g.phase3.100k.b38.vcf.gz.dat.V
-mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.chr.biallelic.snps.minAF0.01.vcf.gz.UD 1000g.phase3.100k.b38.vcf.gz.dat.UD
+mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.biallelic.snps.minAF0.01.vcf.gz.bed 1000g.phase3.100k.b38.vcf.gz.dat.bed
+mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.biallelic.snps.minAF0.01.vcf.gz.mu 1000g.phase3.100k.b38.vcf.gz.dat.mu
+mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.biallelic.snps.minAF0.01.vcf.gz.PC 1000g.phase3.100k.b38.vcf.gz.dat.V
+mv ALL.shapeit2_integrated_snvindels_v2a_27022019.GRCh38.phased.biallelic.snps.minAF0.01.vcf.gz.UD 1000g.phase3.100k.b38.vcf.gz.dat.UD
 
 # move them into the correct location, backing up the original resource folder
 cd /home/u035/u035/shared/software/bcbio/anaconda/share/verifybamid2-1.0.6-0
-- 
GitLab