From 210f00563057ecaf491896125b09f6b797fff118 Mon Sep 17 00:00:00 2001
From: ameyner2 <alison.meynert@igmm.ed.ac.uk>
Date: Sun, 2 May 2021 10:07:37 +0100
Subject: [PATCH] Archive raw reads for project as well

---
 submit_trio_wes_archive_project.sh | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/submit_trio_wes_archive_project.sh b/submit_trio_wes_archive_project.sh
index 0149260..9885dff 100755
--- a/submit_trio_wes_archive_project.sh
+++ b/submit_trio_wes_archive_project.sh
@@ -14,6 +14,12 @@
 # Source the configuration file
 source $CONFIG_SH
 
+# Move to the raw reads folder
+cd $$DOWNLOAD_DIR
+
+# Copy the raw read files
+rsync -av $project_id $ARCHIVE_DIR/data/
+
 # Move to the output directory
 cd $OUTPUT_DIR
 
-- 
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