From 2a1db33d752a1b57a518166d8dba2c079b1d10f2 Mon Sep 17 00:00:00 2001
From: ameyner2 <alison.meynert@igmm.ed.ac.uk>
Date: Thu, 6 Feb 2020 11:35:58 +0000
Subject: [PATCH] Allowed for multiple QC reports
---
submit_trio_wes_archive_project.sh | 1 +
submit_trio_wes_priority_and_qc_checksums.sh | 7 +++++--
2 files changed, 6 insertions(+), 2 deletions(-)
diff --git a/submit_trio_wes_archive_project.sh b/submit_trio_wes_archive_project.sh
index 13f0e18..542e16a 100755
--- a/submit_trio_wes_archive_project.sh
+++ b/submit_trio_wes_archive_project.sh
@@ -36,6 +36,7 @@ DIRS=$(echo $PRIORITY_DIRS | tr ":" "\n")
for dir in $DIRS
do
rsync -av $dir $ARCHIVE_DIR/prioritization/
+ rsync -av $dir.md5sum.txt $ARCHIVE_DIR/prioritization/
done
# move to the archive area and check the md5s
diff --git a/submit_trio_wes_priority_and_qc_checksums.sh b/submit_trio_wes_priority_and_qc_checksums.sh
index 984367b..9163fd9 100755
--- a/submit_trio_wes_priority_and_qc_checksums.sh
+++ b/submit_trio_wes_priority_and_qc_checksums.sh
@@ -16,9 +16,12 @@ source $CONFIG_SH
cd $OUTPUT_DIR/qc
-md5sum ${PROJECT_ID}_qc_report.html > ${PROJECT_ID}_qc_report.md5sum.txt
+for file in ${PROJECT_ID}_qc_report*.html
+do
+ md5sum $file >> ${PROJECT_ID}_qc_report.md5sum.txt
+done
-for file in `find ${PROJECT_ID}_qc_report_data -type f`
+for file in `find ${PROJECT_ID}_qc_report*_data -type f`
do
md5sum $file >> ${PROJECT_ID}_qc_report.md5sum.txt
done
--
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