From 39a93ee5bd4d7c8383d66d6712e2fe771ae5cd13 Mon Sep 17 00:00:00 2001 From: ameyner2 <alison.meynert@ed.ac.uk> Date: Thu, 18 Nov 2021 08:13:17 +0000 Subject: [PATCH] Update tool_and_data_change_tracking.md --- docs/tool_and_data_change_tracking.md | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/docs/tool_and_data_change_tracking.md b/docs/tool_and_data_change_tracking.md index 60b13b2..a3377e2 100644 --- a/docs/tool_and_data_change_tracking.md +++ b/docs/tool_and_data_change_tracking.md @@ -16,3 +16,29 @@ grabix | 0.1.8 | 0.1.8 | 0.1.8 | vt | 2015.11.10 | 2015.11.10 | 2015.11.10 | vase | 0.2.4 | 0.4 | 0.4.2 | Identification of de novo variants rtg-tools | 3.10.1 | 3.11 | 3.11 | Used for GIAB concordance analysis + +Resource | bcbio-1.1.5 (ultra) | bcbio-1.2.3 (ultra) | bcbio-1.2.8 (ultra2) | Notes +---------|-------------|-------------|-------------|------ +seq | 1000g-20150219_1 | 1000g-20150219_1 | 1000g-20150219_1 | +bwa | 1000g-20150219 | 1000g-20150219 | 1000g-20150219 | +ccds | r20 | r20 | r20 | +capture_regions | 20161202 | 20161202 | 20161202 | +coverage | 2018-10-16 | 2018-10-16 | 2018-10-16 | +prioritize | 20181227 | 20181227 | 20181227 | +dbsnp | 151-20180418 | 153-20180725 | 154-20210112 | VCF annotations +hapmap_snps | 20160105 | 20160105 | 20160105 | +1000g_omni_snps | 20160105 | 20160105 | 20160105 | +ACMG56_genes | 20160726 | 20160726 | 20160726 | +1000g_snps | 20160105 | 20160105 | 20160105 | +mills_indels | 20160105 | 20160105 | 20160105 | +1000g_indels | 2.8_hg38_20150522 | 2.8_hg38_20150522 | 2.8_hg38_20150522 | +clinvar | 20190513 | 20190513 | 20210110 | VCF annotations +qsignature | 20160526 | 20160526 | 20160526 | +genesplicer | 2004.04.03 | 2004.04.03 | 2004.04.03 | +effects_transcript | 2017-03-16 | 2017-03-16 | 2017-03-16 | +varpon | 20181105 | 20181105 | 20181105 | +vcfanno | 20190119 | 20190119 | 20210204 | VCF annotations +viral | 2017.02.04 | 2017.02.04 | 2017.02.04 | +gnomad genomes | 2.1 | 3.0 | 3.1.1 | VCF annotations +gnomad exomes | 2.1 | 2.1 | 2.1.1 | VCF annotations +dbnsfp | 3.5a | not installed | not installed | VCF annotations, not used -- GitLab