diff --git a/docs/Software_installation.md b/docs/Software_installation.md index 0cb550e3b671381c4c5ee0dc590a0fd5dcccaf93..aa8d60224b4d17db8b59740c78d675cd7814d77f 100644 --- a/docs/Software_installation.md +++ b/docs/Software_installation.md @@ -107,7 +107,15 @@ mkdir resource mv /home/u035/project/software/install/1000G_phase3_hg38/1000g.phase3.100k.b38* resource/ ``` -## VASE +## Python modules + +Users should include this line in any shell scripts requiring these modules: + +``` +export PYTHONPATH=/home/u035/project/software/lib/python3.6/site-packages +``` + +### VASE VASE was installed following the instructions at https://github.com/david-a-parry/vase, downloaded 27 August 2020. @@ -118,13 +126,7 @@ cd vase /home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software ``` -Users should include this line in any shell scripts calling VASE: - -``` -export PYTHONPATH=/home/u035/project/software/lib/python3.6/site-packages -``` - -## XlsxWriter +### XlsxWriter ``` cd /home/u035/project/software/install @@ -132,5 +134,3 @@ git clone https://github.com/jmcnamara/XlsxWriter.git cd XlsxWriter /home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software ``` - -See above for PYTHONPATH. \ No newline at end of file