From 47a33651cf16ec003d7b5a095a9ae3fdce3a7f7b Mon Sep 17 00:00:00 2001
From: ameyner2 <alison.meynert@igmm.ed.ac.uk>
Date: Thu, 27 Aug 2020 10:02:45 +0100
Subject: [PATCH] Reconfigured generic python module section

---
 docs/Software_installation.md | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/docs/Software_installation.md b/docs/Software_installation.md
index 0cb550e..aa8d602 100644
--- a/docs/Software_installation.md
+++ b/docs/Software_installation.md
@@ -107,7 +107,15 @@ mkdir resource
 mv /home/u035/project/software/install/1000G_phase3_hg38/1000g.phase3.100k.b38* resource/
 ```
 
-## VASE
+## Python modules
+
+Users should include this line in any shell scripts requiring these modules:
+
+```
+export PYTHONPATH=/home/u035/project/software/lib/python3.6/site-packages
+```
+
+### VASE
 
 VASE was installed following the instructions at https://github.com/david-a-parry/vase, downloaded 27 August 2020.
 
@@ -118,13 +126,7 @@ cd vase
 /home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software
 ```
 
-Users should include this line in any shell scripts calling VASE:
-
-```
-export PYTHONPATH=/home/u035/project/software/lib/python3.6/site-packages
-```
-
-## XlsxWriter
+### XlsxWriter
 
 ```
 cd /home/u035/project/software/install
@@ -132,5 +134,3 @@ git clone https://github.com/jmcnamara/XlsxWriter.git
 cd XlsxWriter
 /home/u035/project/software/bcbio/anaconda/bin/python3 setup.py install --prefix /home/u035/project/software
 ```
-
-See above for PYTHONPATH.
\ No newline at end of file
-- 
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