diff --git a/docs/SOP_alignment_variant_annotation.md b/docs/SOP_alignment_variant_annotation.md
index 6e9b6886fa76938390262f4e9ecc415565c53ad8..165c92d55578af885a6ae0eb66953175b67baeb9 100644
--- a/docs/SOP_alignment_variant_annotation.md
+++ b/docs/SOP_alignment_variant_annotation.md
@@ -221,8 +221,7 @@ X=`wc -l $PARAMS_DIR/$project_id.family_ids.txt | awk '{print $1}'`
 
 ```
 cd /home/u035/project/trio_whole_exome/analysis/logs
-qsub -v PROJECT_ID=$project_id,VERSION=$version\
-  CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
+qsub -v PROJECT_ID=$project_id,VERSION=$version,CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
   -J 1-$X -N trio_whole_exome_bcbio.$project_id \
   /home/u035/project/scripts/submit_bcbio_trio_wes.sh
 ```