From 729c19b187ca8237372db060bfe1b8af8f86fa25 Mon Sep 17 00:00:00 2001
From: ameyner2 <alison.meynert@igmm.ed.ac.uk>
Date: Wed, 7 Apr 2021 09:20:07 +0100
Subject: [PATCH] Fixed comma in qsub
---
docs/SOP_alignment_variant_annotation.md | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/docs/SOP_alignment_variant_annotation.md b/docs/SOP_alignment_variant_annotation.md
index 6e9b688..165c92d 100644
--- a/docs/SOP_alignment_variant_annotation.md
+++ b/docs/SOP_alignment_variant_annotation.md
@@ -221,8 +221,7 @@ X=`wc -l $PARAMS_DIR/$project_id.family_ids.txt | awk '{print $1}'`
```
cd /home/u035/project/trio_whole_exome/analysis/logs
-qsub -v PROJECT_ID=$project_id,VERSION=$version\
- CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
+qsub -v PROJECT_ID=$project_id,VERSION=$version,CONFIG_SH=/home/u035/project/scripts/trio_whole_exome_config.sh \
-J 1-$X -N trio_whole_exome_bcbio.$project_id \
/home/u035/project/scripts/submit_bcbio_trio_wes.sh
```
--
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