diff --git a/submit_trio_wes_aspera_download.sh b/submit_trio_wes_aspera_download.sh index 8bad2630423bba05fd0408326d8e484b8b24de30..2a1221a0efc34bd5a7ecae4172424f34b30f1376 100755 --- a/submit_trio_wes_aspera_download.sh +++ b/submit_trio_wes_aspera_download.sh @@ -7,20 +7,13 @@ source $TRANSFER_INFO_FILE -TIMELOG=/home/u035/project/trio_whole_exome/logs/project/$PROJECT.log - -echo $PROJECT submit_trio_wes_aspera_download.sh start `date` >> $TIMELOG - - /home/u035/project/software/aspera/connect/bin/ascp \ -T -P 33001 -O 33001 -l 500M -k2 --overwrite=diff \ $ASPERA_SCP_USER@transfer.genomics.ed.ac.uk:$PROJECT \ /scratch/u035/project/trio_whole_exome/data - cd /scratch/u035/project/trio_whole_exome/data/$PROJECT/raw_data - rm ../md5_check.txt 2> /dev/null for DATE in 20*[0-9] do @@ -28,6 +21,3 @@ do md5sum --check md5sums.txt >> ../../md5_check.txt cd .. done - -echo $PROJECT submit_trio_wes_aspera_download.sh end `date` >> $TIMELOG -