diff --git a/docs/Software_installation.md b/docs/Software_installation.md
index b4b158dda67119aab4e58e4f4731b5d01f44f5dc..1a8c1e5a7f26fa6348b3d3e282f2a3c5620f216c 100644
--- a/docs/Software_installation.md
+++ b/docs/Software_installation.md
@@ -27,21 +27,21 @@ Fix an issue with bcbio & vt/samtools/htslib. See https://github.com/bcbio/bcbio
 
 ```
 DATE=`date +%Y%m%d%H%M`
-/home/u035/project/software/bcbio/tools/bcbio_nextgen.py upgrade -u development --tools &> bcbio_install_upgrade_tools_${DATE}.log
+/home/u035/project/software/bcbio/tools/bin/bcbio_nextgen.py upgrade -u development --tools &> bcbio_install_upgrade_tools_${DATE}.log
 ```
 
 Install datatarget variation
 
 ```
 DATE=`date +%Y%m%d%H%M`
-/home/u035/project/software/bcbio/tools/bcbio_nextgen.py upgrade -u skip --datatarget variation &> bcbio_install_datatarget_variation_${DATE}.log
+/home/u035/project/software/bcbio/tools/bin/bcbio_nextgen.py upgrade -u skip --datatarget variation &> bcbio_install_datatarget_variation_${DATE}.log
 ```
 
 Install datatarget vep
 
 ```
 DATE=`date +%Y%m%d%H%M`
-/home/u035/project/software/bcbio/tools/bcbio_nextgen.py upgrade -u skip --datatarget vep &> bcbio_install_datatarget_vep_${DATE}.log
+/home/u035/project/software/bcbio/tools/bin/bcbio_nextgen.py upgrade -u skip --datatarget vep &> bcbio_install_datatarget_vep_${DATE}.log
 ```
 
 We already had gnomAD 3.0 compiled and downloaded from another bcbio installation, so this gets copied to /home/u035/project/software/bcbio/genomes/Hsapiens/hg38/variation.