From 8298c18d15b85aed7ca8a84d9fb292015c6c1592 Mon Sep 17 00:00:00 2001
From: ameyner2 <alison.meynert@igmm.ed.ac.uk>
Date: Mon, 4 Oct 2021 12:11:44 +0100
Subject: [PATCH] Allowed for new path
---
trio_whole_exome_parse_peddy_ped_csv.pl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/trio_whole_exome_parse_peddy_ped_csv.pl b/trio_whole_exome_parse_peddy_ped_csv.pl
index 7f96478..e72bda8 100644
--- a/trio_whole_exome_parse_peddy_ped_csv.pl
+++ b/trio_whole_exome_parse_peddy_ped_csv.pl
@@ -78,7 +78,7 @@ printf $out_fh "project_id\tbatch_id\tsample_a\tsample_b\tpedigree_parents\tpred
foreach my $family_id (sort keys %ped)
{
- my @peddy_glob = glob(sprintf("$out_dir/*_%s_%s_%s_%s/%s_%s/qc/peddy/%s%s.ped_check.csv",
+ my @peddy_glob = glob(sprintf("$out_dir/*/*_%s_%s_%s_%s/%s_%s/qc/peddy/%s%s.ped_check.csv",
$version, $project_id, $batch_id, $family_id, $ped{$family_id}{'aff'}, $family_id, $batch_id, $family_id));
next if (scalar(@peddy_glob) == 0);
--
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