From a29ba755b85ae3227797ea2c534ed6e8b494da0e Mon Sep 17 00:00:00 2001
From: ameyner2 <alison.meynert@igmm.ed.ac.uk>
Date: Fri, 28 Aug 2020 10:31:58 +0100
Subject: [PATCH] VEP 100.4 patch

---
 docs/Software_installation.md | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/docs/Software_installation.md b/docs/Software_installation.md
index 4101355..8af1a56 100644
--- a/docs/Software_installation.md
+++ b/docs/Software_installation.md
@@ -53,6 +53,12 @@ Increase JVM memory for GATK in galaxy/bcbio_system.yaml
     jvm_opts: ["-Xms500m", "-Xmx5g"]
 ```
 
+### Patch Ensembl VEP 100.4
+
+See https://github.com/Ensembl/ensembl-variation/pull/621/files
+
+Edit /home/u035/project/software/bcbio/anaconda/share/ensembl-vep-100.4-0/Bio/EnsEMBL/Variation/BaseAnnotation.pm accordingly.
+
 ### Verifybamid custom panel for exomes
 
 ```
-- 
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