diff --git a/pipeline/main.nf b/pipeline/main.nf index 9ee2571b22e71d7ea53aa3f5847637add3748bda..174c112bad30c9fba4831e604d1b595fe4242199 100644 --- a/pipeline/main.nf +++ b/pipeline/main.nf @@ -75,9 +75,7 @@ workflow prepare_bcbio_config { main: ch_merged_fastqs = merge_fastqs(ch_samplesheet_info) - ch_merged_data = ch_individuals_by_family.map( - { k, v -> v } - ) + ch_merged_data = ch_individuals_by_family.map({ k, v -> v }) .join(ch_merged_fastqs) .map( { sample_id, family_id, father, mother, sex, phenotype, r1s, r2s, merged_r1, merged_r2 -> diff --git a/tests/scripts/bcbio_nextgen.py b/tests/scripts/bcbio_nextgen.py index c8da36adc591810f50d69215b14dba4443c63f7f..7d102f3372b05a47fba2133ba1d8072f8fbea7d6 100755 --- a/tests/scripts/bcbio_nextgen.py +++ b/tests/scripts/bcbio_nextgen.py @@ -1,4 +1,4 @@ -#/usr/bin/env python +#!/usr/bin/env python """ Fake BCBio for testing with the empty datasets from tests/assets/ """