diff --git a/docs/SOP_alignment_variant_annotation.md b/docs/SOP_alignment_variant_annotation.md index 0e8dac954b645f4e7523ea77ab9a49100871a33d..446f8e32899109e817caf8d0e546dfc77984e453 100644 --- a/docs/SOP_alignment_variant_annotation.md +++ b/docs/SOP_alignment_variant_annotation.md @@ -162,7 +162,7 @@ X=`wc -l $PARAMS_DIR/$project_id.family_ids.txt | awk '{print $1}'` ``` cd $LOGS_DIR sbatch --export=PROJECT_ID=$project_id,VERSION=$version,CONFIG_SH=$SCRIPTS/trio_whole_exome_config.sh \ - --array=1-$X --job-name=trio_whole_exome_bcbio.$project_id \ + --array=1-$X --job-name=trio_whole_exome_bcbio.$short_project_id \ $SCRIPTS/submit_bcbio_trio_wes.sh ``` @@ -216,4 +216,4 @@ cd /home/u035/u035/shared/analysis/reads/${project_id} rm `ls | grep -v -f retain_for_rerun.txt` ``` -10. Update the batch status spreadsheet. Move to [SOP archiving](SOP_archiving.md). +10. Update the batch status spreadsheet. Move to [SOP prioritization](SOP_prioritization.md).