From ca876eabe4e14c4718f3582d4d5a7d531762a913 Mon Sep 17 00:00:00 2001
From: not populated not populated <ameynert@sdf-cs1.eidf.epcc.ed.ac.uk>
Date: Mon, 4 Oct 2021 12:54:24 +0100
Subject: [PATCH] Use short project id for log files, move to prioritization
 next

---
 docs/SOP_alignment_variant_annotation.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/docs/SOP_alignment_variant_annotation.md b/docs/SOP_alignment_variant_annotation.md
index 0e8dac9..446f8e3 100644
--- a/docs/SOP_alignment_variant_annotation.md
+++ b/docs/SOP_alignment_variant_annotation.md
@@ -162,7 +162,7 @@ X=`wc -l $PARAMS_DIR/$project_id.family_ids.txt | awk '{print $1}'`
 ```
 cd $LOGS_DIR
 sbatch --export=PROJECT_ID=$project_id,VERSION=$version,CONFIG_SH=$SCRIPTS/trio_whole_exome_config.sh \
-  --array=1-$X --job-name=trio_whole_exome_bcbio.$project_id \
+  --array=1-$X --job-name=trio_whole_exome_bcbio.$short_project_id \
   $SCRIPTS/submit_bcbio_trio_wes.sh
 ```
 
@@ -216,4 +216,4 @@ cd /home/u035/u035/shared/analysis/reads/${project_id}
 rm `ls | grep -v -f retain_for_rerun.txt`
 ```
 
-10. Update the batch status spreadsheet. Move to [SOP archiving](SOP_archiving.md).
+10. Update the batch status spreadsheet. Move to [SOP prioritization](SOP_prioritization.md).
-- 
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