diff --git a/docs/run-notes/19373_run_notes.md b/docs/run-notes/19373_run_notes.md
index e4dfad39a11c882282a603fce3ddc2b8591d20e5..a2b843a176c7ef1bbd1b2b33cac557294cb63b4c 100644
--- a/docs/run-notes/19373_run_notes.md
+++ b/docs/run-notes/19373_run_notes.md
@@ -160,3 +160,51 @@ time java -Xmx24g -jar ${GATK3} -T SelectVariants \
 -o ${PLATE_ID}_${FAMILY_ID}-gatk-haplotype-annotated.vcf.gz  \
 -env
 ```
+
+## Shared affected prioritization
+
+```
+SOURCE_DIR=/scratch/u035/project/trio_whole_exome/analysis/output
+BATCH_ID=20211005_Ansari_Morad
+BATCH_NUM=20211006
+PLATE_ID=19373
+PROJECT_ID=20211006_19373_438214
+VERSION_N=v1
+FAMILY_ID=438214
+DECIPHER_ID=62137_3387_mat
+
+cd /scratch/u035/project/trio_whole_exome/analysis/${PROJECT_ID}/LOG
+qsub -v SOURCE_DIR=${SOURCE_DIR}/${VERSION_N}_${BATCH_NUM},BATCH_ID=${BATCH_ID},PLATE_ID=${PLATE_ID},PROJECT_ID=${PROJECT_ID},VERSION_N=${VERSION_N},FAMILY_ID=${FAMILY_ID},DECIPHER_ID=${DECIPHER_ID} /home/u035/project/scripts/process_NHS_WES_aff_probands.sh 
+```
+
+Job id 14965
+
+## IGV snapshots
+
+```
+/home/u035/project/software/IGV_Linux_2.8.9/igv.sh
+```
+
+* View > Preferences > Alignments - make sure “Downsample reads” is unchecked
+* View > Preferences > Alignments – make sure “Show center line” is checked
+* run Tools > Run Batch Script, for each family
+
+## Gather results
+
+```
+PLATE_ID=19373
+PROJECT_ID=20211006_19373_438214
+VERSION_N=v1
+FAMILY_ID=438214
+JOB_ID=14965
+cd /scratch/u035/project/trio_whole_exome/analysis/${PROJECT_ID}/LOG
+mkdir /scratch/u035/project/trio_whole_exome/analysis/${PROJECT_ID}/${PLATE_ID}_${VERSION_N}_results
+qsub -v PLATE_ID=${PLATE_ID},PROJECT_ID=${PROJECT_ID},VERSION_N=${VERSION_N},FAMILY_ID=${FAMILY_ID},JOB_ID=${JOB_ID} /home/u035/project/scripts/gather_NHS_WES_aff_probands_results.sh
+```
+
+# Copy directly to encrypted USB
+
+```
+/scratch/u035/project/trio_whole_exome/analysis/20211006_19373/19373_v1_results/*
+/scratch/u035/project/trio_whole_exome/analysis/20211006_19373_438214/19373_v1_results/*
+```
\ No newline at end of file