From f4797a548afca93fa32f3c00f2b90f38b312a136 Mon Sep 17 00:00:00 2001
From: ameyner2 <alison.meynert@igmm.ed.ac.uk>
Date: Mon, 10 Feb 2020 15:09:23 +0000
Subject: [PATCH] Fixed if empty line in PED file, added ped check files to
md5sum generation for archiving
---
submit_trio_wes_priority_and_qc_checksums.sh | 5 +++++
1 file changed, 5 insertions(+)
diff --git a/submit_trio_wes_priority_and_qc_checksums.sh b/submit_trio_wes_priority_and_qc_checksums.sh
index 9163fd9..e145960 100755
--- a/submit_trio_wes_priority_and_qc_checksums.sh
+++ b/submit_trio_wes_priority_and_qc_checksums.sh
@@ -21,6 +21,11 @@ do
md5sum $file >> ${PROJECT_ID}_qc_report.md5sum.txt
done
+for file in ${PROJECT_ID}.ped_check*.txt
+do
+ md5sum $file >> ${PROJECT_ID}_qc_report.md5sum.txt
+done
+
for file in `find ${PROJECT_ID}_qc_report*_data -type f`
do
md5sum $file >> ${PROJECT_ID}_qc_report.md5sum.txt
--
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