Intersection-between-UK-Biobank-and-Illumina-GSA-arrays.md

@@ -35,3 +35,19 @@ wc -l *.csv
     845507 Axiom_UKB_WCSG.na34.annot.csv
     730091 GSAMD-24v3-0-EA_20034606_A1.csv
 ```
+
+### Content of files
+
+UKB Axiom:
+```
+"Probe Set ID","Affy SNP ID","dbSNP RS ID","dbSNP Loctype","Chromosome","Physical Position","Position End","Strand","ChrX pseudo-autosomal region 1","Cytoband","Flank","Allele A","All
+"AFFX-KIT-000001","Affx-32899432","rs1000440","2","9","101258881","101258881","+","0","q22.33","GGGCCAGTTCCGAGGGGTCACCCTGGGGAAGTCAA[C/T]TGGGCAAAGCGATTTTCTCTACCGACAATGCAAAG","T","C","T
+"AFFX-KIT-000002","Affx-23811321","rs10007601","2","4","164934874","164934874","+","0","q32.3","CAGCAACTGTGCAGGTCACAAGGAAGTGAGATGAC[A/G]AAGTCAAAGTGCTGATGGAAAAAAAAATCTTTCAA","A","G","G
+```
+
+Illumina GSA:
+```
+IlmnID,Name,IlmnStrand,SNP,AddressA_ID,AlleleA_ProbeSeq,AddressB_ID,AlleleB_ProbeSeq,GenomeBuild,Chr,MapInfo,Ploidy,Species,Source,SourceVersion,SourceStrand,SourceSeq,TopGenomicSeq,B
+1:103380393-0_B_R_2346041316,1:103380393,BOT,[T/C],0009663149,AATAAACTTTTATGCAAAACTTGTAAGATAACTCTTCTTTCCTTCTTCTT,,,37,1,103380393,diploid,Homo sapiens,1000genomes,0,TOP,GCTTCCCCTTTCTC
+1:106737318-0_T_R_2346041332,1:106737318,TOP,[A/C],0032761967,TCAACGTTTGTATATCTGAATAAGATCTTATTTATTCTTTGCTTACAAAA,,,37,1,106737318,diploid,Homo sapiens,1000genomes,0,BOT,gggcctatattcta
+```
\ No newline at end of file