diff --git a/scripts/scheduleScenarios.sh b/scripts/scheduleScenarios.sh index 50a38fc306ef55a2a1c49edebeb4f61e5a8fc85c..77aa5c435a3b51d3a6acfdef6b7581af612ba6e9 100755 --- a/scripts/scheduleScenarios.sh +++ b/scripts/scheduleScenarios.sh @@ -7,10 +7,10 @@ fi filename="$1" -output_dir=/Users/peteralexander/Documents/R_Workspace/UNPLUM/dummy/scenarios/ +output_dir=/exports/csce/eddie/geos/groups/LURG/models/PLUM/output echo "Starting scenarios in $output_dir" -while read -r datarow $filename +while read -r datarow do IFS=',' read -r -a array <<< "$datarow" @@ -18,7 +18,7 @@ do header=( "${array[@]}" ) else scenario="${array[0]}" - scenario_dir=$output_dir$scenario + scenario_dir=$output_dir/$scenario echo $scenario if [ ! -d "$scenario_dir" ]; then @@ -26,7 +26,8 @@ do continue; fi - echo "qsub runPlum.sh scenario_dir" + echo "qsub /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runPlum.sh $scenario" + qsub /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runPlum.sh $scenario fi done < $filename