From bde7c91735a255dd8b24ae15ed11587d2a97bbc0 Mon Sep 17 00:00:00 2001
From: Peter Alexander <p.m.w.alexander@gmail.com>
Date: Tue, 13 Jun 2017 09:10:10 +0100
Subject: [PATCH] More cluster script changes
---
scripts/runCalibAndPlum.sh | 9 +++++----
scripts/scheduleHindScenarios.sh | 34 ++++++++++++++++++++++++++++++++
2 files changed, 39 insertions(+), 4 deletions(-)
create mode 100755 scripts/scheduleHindScenarios.sh
diff --git a/scripts/runCalibAndPlum.sh b/scripts/runCalibAndPlum.sh
index b157b8db..3c635f57 100755
--- a/scripts/runCalibAndPlum.sh
+++ b/scripts/runCalibAndPlum.sh
@@ -5,10 +5,11 @@ if [ $# -ne 1 ]; then
exit 0
fi
-jobName=${1//\//_}c # remove slash from path as qsub doesnt allow it
-jobName=${jobName/hind1970/h_}
-echo $jobName
-calibJob=${jobName}_c
+jobName=${1//\//_} # remove slash from path as qsub doesnt allow it
+jobName=${jobName/hind1970/h}
+calibJob=${jobName}c
+echo ""
+echo $jobName, $calibJob
qsub -N $calibJob /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runPlum.sh $1/calib
qsub -N $jobName -hold_jid $calibJob /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runPlum.sh $1
diff --git a/scripts/scheduleHindScenarios.sh b/scripts/scheduleHindScenarios.sh
new file mode 100755
index 00000000..2e3138c5
--- /dev/null
+++ b/scripts/scheduleHindScenarios.sh
@@ -0,0 +1,34 @@
+#!/bin/sh
+
+if [ "$#" -lt 1 ]; then
+ echo "Need to specify scenario table file"
+ exit
+fi
+
+
+filename="$1"
+output_dir=/exports/csce/eddie/geos/groups/LURG/models/PLUM/output/hind1970
+echo "Starting scenarios in $output_dir"
+
+while read -r datarow
+do
+ IFS=',' read -r -a array <<< "$datarow"
+
+ if [ -z "$header" ]; then
+ header=( "${array[@]}" )
+ else
+ ensemble="${array[0]}"
+ scenario="${array[1]}"
+ scenario_dir=$output_dir/$ensemble/$scenario
+ echo $scenario for $ensemble
+
+ if [ ! -d "$scenario_dir" ]; then
+ echo "Scenario $scenario dir is missing, so skipping"
+ continue;
+ fi
+
+ echo "/exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runCalibAndPlum.sh hind1970/$ensemble/$scenario"
+ /exports/csce/eddie/geos/groups/LURG/models/PLUM/plumv2/scripts/runCalibAndPlum.sh hind1970/$ensemble/$scenario
+ fi
+done < $filename
+
--
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