diff --git a/doc/src/Section_commands.txt b/doc/src/Section_commands.txt index 2eef5d1d29d0ff573c4bdf05171efad1cccdbe39..f8e9f4907396e1e5c30f146dcb9f457726ccfc34 100644 --- a/doc/src/Section_commands.txt +++ b/doc/src/Section_commands.txt @@ -618,6 +618,7 @@ package"_Section_start.html#start_3. "atc"_fix_atc.html, "ave/correlate/long"_fix_ave_correlate_long.html, "colvars"_fix_colvars.html, +"dpd/energy"_fix_dpd_energy.html, "drude"_fix_drude.html, "drude/transform/direct"_fix_drude_transform.html, "drude/transform/reverse"_fix_drude_transform.html, @@ -923,6 +924,7 @@ KOKKOS, o = USER-OMP, t = OPT. "tip4p/long (o)"_pair_coul.html, "tri/lj"_pair_tri_lj.html, "vashishta (o)"_pair_vashishta.html, +"vashishta/table (o)"_pair_vashishta_table.html, "yukawa (go)"_pair_yukawa.html, "yukawa/colloid (go)"_pair_yukawa_colloid.html, "zbl (go)"_pair_zbl.html :tb(c=4,ea=c) diff --git a/doc/src/fix_dpd_energy.txt b/doc/src/fix_dpd_energy.txt index 0a3c1d413970d496aeea6de8ebf48724cff4ff39..9c4a55e964c6d883c7d2ddfe52ed2b49e10f77f2 100644 --- a/doc/src/fix_dpd_energy.txt +++ b/doc/src/fix_dpd_energy.txt @@ -21,10 +21,10 @@ fix 1 all dpd/energy :pre [Description:] -Perform constant energy dissipative particle dynamics (DPD-E) integration. -The fix {dpd/energy} updates the internal energies for particles in the group -at each timestep. The fix {dpd/energy} must be used in conjunction with a -deterministic integrator (e.g. "fix nve"_fix_nve.html) that updates +Perform constant energy dissipative particle dynamics (DPD-E) +integration. This fix updates the internal energies for particles in +the group at each timestep. It must be used in conjunction with a +deterministic integrator (e.g. "fix nve"_fix_nve.html) that updates the particle positions and velocities. For fix {dpd/energy}, the particle internal temperature is related to @@ -32,7 +32,7 @@ the particle internal energy through a mesoparticle equation of state. An additional fix must be specified that defines the equation of state for each particle, e.g. "fix eos/cv"_fix_eos_cv.html. -The fix {dpd/energy} must be used with the "pair_style +This fix must be used with the "pair_style dpd/fdt/energy"_pair_style.html command. Note that numerous variants of DPD can be specified by choosing an