From 54aba63443b07445bba8f3fa256304c56b749d1a Mon Sep 17 00:00:00 2001
From: sjplimp <sjplimp@f3b2605a-c512-4ea7-a41b-209d697bcdaa>
Date: Tue, 2 Oct 2007 22:56:45 +0000
Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@918
f3b2605a-c512-4ea7-a41b-209d697bcdaa
---
doc/compute.html | 5 +++++
doc/compute.txt | 5 +++++
doc/fix.html | 5 +++++
doc/fix.txt | 5 +++++
doc/kspace_style.html | 7 ++++++-
doc/kspace_style.txt | 7 ++++++-
doc/pair_coeff.html | 5 +++++
doc/pair_coeff.txt | 5 +++++
doc/pair_style.html | 19 ++++++-------------
doc/pair_style.txt | 21 +++++++--------------
10 files changed, 55 insertions(+), 29 deletions(-)
diff --git a/doc/compute.html b/doc/compute.html
index 54744bf3d0..bfe35ef64e 100644
--- a/doc/compute.html
+++ b/doc/compute.html
@@ -104,6 +104,11 @@ defined in LAMMPS:
<LI><A HREF = "compute_variable.html">variable</A> - calculate a scalar value from a variable
<LI><A HREF = "compute_variable_atom.html">variable/atom</A> - calculate a formula for each atom
</UL>
+<P>There are also additional compute styles submitted by users which are
+included in the LAMMPS distribution. The list of these with links to
+the individual styles are given in the compute section of <A HREF = "Section_commands.html#3_5">this
+page</A>.
+</P>
<P><B>Restrictions:</B> none
</P>
<P><B>Related commands:</B>
diff --git a/doc/compute.txt b/doc/compute.txt
index 477f407ea2..67c53d3be4 100644
--- a/doc/compute.txt
+++ b/doc/compute.txt
@@ -101,6 +101,11 @@ defined in LAMMPS:
"variable"_compute_variable.html - calculate a scalar value from a variable
"variable/atom"_compute_variable_atom.html - calculate a formula for each atom :ul
+There are also additional compute styles submitted by users which are
+included in the LAMMPS distribution. The list of these with links to
+the individual styles are given in the compute section of "this
+page"_Section_commands.html#3_5.
+
[Restrictions:] none
[Related commands:]
diff --git a/doc/fix.html b/doc/fix.html
index 7581c19e69..7af7753e3c 100644
--- a/doc/fix.html
+++ b/doc/fix.html
@@ -128,6 +128,11 @@ for individual fixes for info on which ones can be restarted.
<LI><A HREF = "fix_wall_reflect.html">fix wall/reflect</A> - reflecting wall(s)
<LI><A HREF = "fix_wiggle.html">fix wiggle</A> - oscillate walls and frozen atoms
</UL>
+<P>There are also additional fix styles submitted by users which are
+included in the LAMMPS distribution. The list of these with links to
+the individual styles are given in the fix section of <A HREF = "Section_commands.html#3_5">this
+page</A>.
+</P>
<P><B>Restrictions:</B>
</P>
<P>Some fix styles are part of specific packages. They are only enabled
diff --git a/doc/fix.txt b/doc/fix.txt
index 2e96c71036..70347560fd 100644
--- a/doc/fix.txt
+++ b/doc/fix.txt
@@ -133,6 +133,11 @@ Here is an alphabetic list of fix styles available in LAMMPS:
"fix wall/reflect"_fix_wall_reflect.html - reflecting wall(s)
"fix wiggle"_fix_wiggle.html - oscillate walls and frozen atoms :ul
+There are also additional fix styles submitted by users which are
+included in the LAMMPS distribution. The list of these with links to
+the individual styles are given in the fix section of "this
+page"_Section_commands.html#3_5.
+
[Restrictions:]
Some fix styles are part of specific packages. They are only enabled
diff --git a/doc/kspace_style.html b/doc/kspace_style.html
index 69f337f524..96d9020de1 100644
--- a/doc/kspace_style.html
+++ b/doc/kspace_style.html
@@ -15,7 +15,7 @@
</P>
<PRE>kspace_style style value
</PRE>
-<UL><LI>style = <I>none</I> or <I>ewald</I> or <I>pppm</I>
+<UL><LI>style = <I>none</I> or <I>ewald</I> or <I>pppm</I> or others as referenced below
<PRE> <I>none</I> value = none
<I>ewald</I> value = precision
@@ -59,6 +59,11 @@ adds a charge at the massless 4th site in each TIP4P water molecule.
It should be used with <A HREF = "pair_style.html">pair styles</A> with a
<I>long/tip4p</I> in their style name.
</P>
+<P>There are also additional kspace styles submitted by users which are
+included in the LAMMPS distribution. The list of these with links to
+the individual styles are given in the kspace section of <A HREF = "Section_commands.html#3_5">this
+page</A>.
+</P>
<P>When a kspace style is used, a pair style that includes the
short-range correction to the pairwise Coulombic forces must also be
selected. These styles are ones that have a <I>coul/long</I> in their
diff --git a/doc/kspace_style.txt b/doc/kspace_style.txt
index 8dafaf56c3..3c1e686929 100644
--- a/doc/kspace_style.txt
+++ b/doc/kspace_style.txt
@@ -12,7 +12,7 @@ kspace_style command :h3
kspace_style style value :pre
-style = {none} or {ewald} or {pppm} :ulb,l
+style = {none} or {ewald} or {pppm} or others as referenced below :ulb,l
{none} value = none
{ewald} value = precision
precision = desired accuracy
@@ -54,6 +54,11 @@ adds a charge at the massless 4th site in each TIP4P water molecule.
It should be used with "pair styles"_pair_style.html with a
{long/tip4p} in their style name.
+There are also additional kspace styles submitted by users which are
+included in the LAMMPS distribution. The list of these with links to
+the individual styles are given in the kspace section of "this
+page"_Section_commands.html#3_5.
+
When a kspace style is used, a pair style that includes the
short-range correction to the pairwise Coulombic forces must also be
selected. These styles are ones that have a {coul/long} in their
diff --git a/doc/pair_coeff.html b/doc/pair_coeff.html
index 1db5c00c51..04052bdba1 100644
--- a/doc/pair_coeff.html
+++ b/doc/pair_coeff.html
@@ -131,6 +131,11 @@ the pair_style command, and coefficients specified by the associated
<LI><A HREF = "pair_tersoff.html">pair_style tersoff</A> - Tersoff 3-body potential
<LI><A HREF = "pair_yukawa.html">pair_style yukawa</A> - Yukawa potential
</UL>
+<P>There are also additional pair styles submitted by users which are
+included in the LAMMPS distribution. The list of these with links to
+the individual styles are given in the pair section of <A HREF = "Section_commands.html#3_5">this
+page</A>.
+</P>
<HR>
<P><B>Restrictions:</B>
diff --git a/doc/pair_coeff.txt b/doc/pair_coeff.txt
index 9114bfd845..24bb834cb2 100644
--- a/doc/pair_coeff.txt
+++ b/doc/pair_coeff.txt
@@ -127,6 +127,11 @@ the pair_style command, and coefficients specified by the associated
"pair_style tersoff"_pair_tersoff.html - Tersoff 3-body potential
"pair_style yukawa"_pair_yukawa.html - Yukawa potential :ul
+There are also additional pair styles submitted by users which are
+included in the LAMMPS distribution. The list of these with links to
+the individual styles are given in the pair section of "this
+page"_Section_commands.html#3_5.
+
:line
[Restrictions:]
diff --git a/doc/pair_style.html b/doc/pair_style.html
index ed0ce87e1f..b7f9ccc66e 100644
--- a/doc/pair_style.html
+++ b/doc/pair_style.html
@@ -15,19 +15,7 @@
</P>
<PRE>pair_style style args
</PRE>
-<UL><LI>style = one of the following
-
-<UL><LI><I>none</I>, <I>hybrid</I>, <I>hybrid/overlay</I>, <I>airebo</I>, <I>buck</I>, <I>buck/coul/cut</I>,
-<LI><I>buck/coul/long</I>, <I>coul/cut</I>, <I>coul/long</I>, <I>dipole/cut</I>, <I>dpd</I>, <I>eam</I>,
-<LI><I>eam/opt</I>, <I>eam/alloy</I>, <I>eam/alloy/opt</I>, <I>eam/fs</I>, <I>eam/fs/opt</I>,
-<LI><I>gayberne</I>, <I>gran/hertzian</I>, <I>gran/history</I>, <I>gran/no_history</I>,
-<LI><I>lj/charmm/coul/charmm</I>, <I>lj/charmm/coul/charmm/implicit</I>,
-<LI><I>lj/charmm/coul/long</I>, <I>lj/charmm/coul/long/opt</I>, <I>lj/class2</I>,
-<LI><I>lj/class2/coul/cut</I>, <I>lj/class2/coul/long</I>, <I>lj/cut</I>, <I>lj/cut/opt</I>,
-<LI><I>lj/cut/coul/cut</I>, <I>lj/cut/coul/debye</I>, <I>lj/cut/coul/long</I>,
-<LI><I>lj/cut/coul/long/tip4p</I>, <I>lj/expand</I>, <I>lj/smooth</I>, <I>meam</I>, <I>morse</I>,
-<LI><I>morse/opt</I>, <I>soft</I>, <I>sw</I>, <I>table</I>, <I>tersoff</I>, <I>yukawa</I>
-</UL>
+<UL><LI>style = one of the styles from the list below
<LI>args = arguments used by a particular style
</UL>
<P><B>Examples:</B>
@@ -148,6 +136,11 @@ the pair_style command, and coefficients specified by the associated
<LI><A HREF = "pair_tersoff.html">pair_style tersoff</A> - Tersoff 3-body potential
<LI><A HREF = "pair_yukawa.html">pair_style yukawa</A> - Yukawa potential
</UL>
+<P>There are also additional pair styles submitted by users which are
+included in the LAMMPS distribution. The list of these with links to
+the individual styles are given in the pair section of <A HREF = "Section_commands.html#3_5">this
+page</A>.
+</P>
<HR>
<P><B>Restrictions:</B>
diff --git a/doc/pair_style.txt b/doc/pair_style.txt
index c005cd7927..5266adcb5b 100644
--- a/doc/pair_style.txt
+++ b/doc/pair_style.txt
@@ -12,20 +12,8 @@ pair_style command :h3
pair_style style args :pre
-style = one of the following :ulb,l
-
-{none}, {hybrid}, {hybrid/overlay}, {airebo}, {buck}, {buck/coul/cut},
-{buck/coul/long}, {coul/cut}, {coul/long}, {dipole/cut}, {dpd}, {eam},
-{eam/opt}, {eam/alloy}, {eam/alloy/opt}, {eam/fs}, {eam/fs/opt},
-{gayberne}, {gran/hertzian}, {gran/history}, {gran/no_history},
-{lj/charmm/coul/charmm}, {lj/charmm/coul/charmm/implicit},
-{lj/charmm/coul/long}, {lj/charmm/coul/long/opt}, {lj/class2},
-{lj/class2/coul/cut}, {lj/class2/coul/long}, {lj/cut}, {lj/cut/opt},
-{lj/cut/coul/cut}, {lj/cut/coul/debye}, {lj/cut/coul/long},
-{lj/cut/coul/long/tip4p}, {lj/expand}, {lj/smooth}, {meam}, {morse},
-{morse/opt}, {soft}, {sw}, {table}, {tersoff}, {yukawa} :ul
-
-args = arguments used by a particular style :l,ule
+style = one of the styles from the list below
+args = arguments used by a particular style :ul
[Examples:]
@@ -144,6 +132,11 @@ the pair_style command, and coefficients specified by the associated
"pair_style tersoff"_pair_tersoff.html - Tersoff 3-body potential
"pair_style yukawa"_pair_yukawa.html - Yukawa potential :ul
+There are also additional pair styles submitted by users which are
+included in the LAMMPS distribution. The list of these with links to
+the individual styles are given in the pair section of "this
+page"_Section_commands.html#3_5.
+
:line
[Restrictions:]
--
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