From 8993daaa31dbc68d8a9558f5856118791b8d79c5 Mon Sep 17 00:00:00 2001 From: Oliver Henrich <o.henrich@epcc.ed.ac.uk> Date: Tue, 4 Apr 2017 19:54:22 +0100 Subject: [PATCH] Minor update to docu --- doc/src/Section_packages.txt | 4 ++-- doc/src/bond_oxdna.txt | 4 +--- 2 files changed, 3 insertions(+), 5 deletions(-) diff --git a/doc/src/Section_packages.txt b/doc/src/Section_packages.txt index 5c6463a71a..b327b7b1ce 100644 --- a/doc/src/Section_packages.txt +++ b/doc/src/Section_packages.txt @@ -1308,8 +1308,8 @@ oxdna/..."_pair_oxdna.html, "pair_style oxdna2/..."_pair_oxdna2.html, "fix nve/dotc/langevin"_fix_nve_dotc_langevin.html -Author: Oliver Henrich at the University of Strathclyde, Glasgow, UK and -University of Edinburgh (ohenrich@ph.ed.ac.uk). +Author: Oliver Henrich at the University of Strathclyde, Glasgow +(oliver.henrich at strath.ac.uk, also ohenrich at ph.ed.ac.uk). Contact him directly if you have any questions. :line diff --git a/doc/src/bond_oxdna.txt b/doc/src/bond_oxdna.txt index 6cdbbd3546..f9b35a167c 100644 --- a/doc/src/bond_oxdna.txt +++ b/doc/src/bond_oxdna.txt @@ -46,9 +46,7 @@ for excluded volume interaction {oxdna/excv}, stacking {oxdna/stk}, cross-stacki and coaxial stacking interaction {oxdna/coaxstk} as well as hydrogen-bonding interaction {oxdna/hbond} (see also documentation of "pair_style oxdna/excv"_pair_oxdna.html). For the oxDNA2 "(Snodin)"_#oxdna2 bond style the analogous pair styles and an additional Debye-Hueckel pair style {oxdna2/dh} have to be defined. - -The coefficients -in the above example have to be kept fixed and cannot be changed without reparametrizing the entire model. +The coefficients in the above example have to be kept fixed and cannot be changed without reparametrizing the entire model. Example input and data files for DNA duplexes can be found in examples/USER/cgdna/examples/oxDNA/ and /oxDNA2/. A simple python setup tool which creates single straight or helical DNA strands, -- GitLab