diff --git a/doc/src/fix_hyper_global.txt b/doc/src/fix_hyper_global.txt index 655e2655db2126416a5654c5f62c373e9347dc93..55c63547afef1b30bd27e7790b7e2bafd9d72f62 100644 --- a/doc/src/fix_hyper_global.txt +++ b/doc/src/fix_hyper_global.txt @@ -146,8 +146,8 @@ If {qfactor} is set too large, then transitions from one energy basin to another are affected because the bias potential is non-zero at the transition state (e.g. saddle point). If {qfactor} is set too small than little boost is achieved because the Eij strain of some bond in -the system will (nearly) always exceed {qfactor). A value of 0.3 for -{qfactor} is typically a reasonable value. +the system will (nearly) always exceed {qfactor}. A value of 0.3 for +{qfactor} is typically reasonable. The {Vmax} argument is the prefactor on the bias potential. Ideally, tt should be set to a value slightly less than the smallest barrier diff --git a/doc/src/fix_hyper_local.txt b/doc/src/fix_hyper_local.txt index b8e5cf07da33572bc386a7735b2fecb130076577..dfdd22251aff91566ef3035101c63603723a7c9b 100644 --- a/doc/src/fix_hyper_local.txt +++ b/doc/src/fix_hyper_local.txt @@ -172,7 +172,7 @@ If {qfactor} is set too large, then transitions from one energy basin to another are affected because the bias potential is non-zero at the transition state (e.g. saddle point). If {qfactor} is set too small than little boost can be achieved because the Eij strain of some bond in -the system will (nearly) always exceed {qfactor). A value of 0.3 for +the system will (nearly) always exceed {qfactor}. A value of 0.3 for {qfactor} is typically a reasonable value. The {Vmax} argument is a fixed prefactor on the bias potential. There diff --git a/doc/src/hyper.txt b/doc/src/hyper.txt index 936fb665d360a9311e2cb37b83b227a189285b08..b6fe27b9c7123026a71d73f96bf8ad20554b6abb 100644 --- a/doc/src/hyper.txt +++ b/doc/src/hyper.txt @@ -73,7 +73,7 @@ time between events is reduced by a factor of Nr replicas. For both methods, per CPU second, more physical time elapses and more events occur. See the "prd"_prd.html doc page for more info about PRD. -An HD run has several stages, which are repeated each time an "event" +An HD run has several stages, which are repeated each time an event occurs, as explained below. The logic for an HD run is as follows: quench @@ -121,7 +121,7 @@ event/displace"_compute_event_displace.html command. Other event-checking computes may be added. "Compute event/displace"_compute_event_displace.html checks whether any atom in the compute group has moved further than a specified threshold -distance. If so, an "event" has occurred. +distance. If so, an event has occurred. If this happens, the list of bonds is reset, since some bond pairs are likely now too far apart, and new pairs are likely close enough