diff --git a/src/COMPRESS/Install.sh b/src/COMPRESS/Install.sh
old mode 100644
new mode 100755
diff --git a/src/CORESHELL/Install.sh b/src/CORESHELL/Install.sh
old mode 100644
new mode 100755
diff --git a/src/Depend.sh b/src/Depend.sh
old mode 100644
new mode 100755
index b6d9c70f13d96028f56cd77d26bb1aafcf56aab9..a3f4e496673f3b8c896e1675fe13608c0ddd8960
--- a/src/Depend.sh
+++ b/src/Depend.sh
@@ -96,9 +96,8 @@ if (test $1 = "MOLECULE") then
   depend GPU
   depend KOKKOS
   depend USER-MISC
-  depend USER-OMP
   depend USER-FEP
-  depend USER-CGDNA
+  depend USER-OMP
   depend USER-INTEL
 fi
 
diff --git a/src/GPU/Install.sh b/src/GPU/Install.sh
old mode 100644
new mode 100755
diff --git a/src/Install.sh b/src/Install.sh
old mode 100644
new mode 100755
diff --git a/src/KIM/Install.sh b/src/KIM/Install.sh
old mode 100644
new mode 100755
diff --git a/src/KOKKOS/Install.sh b/src/KOKKOS/Install.sh
old mode 100644
new mode 100755
diff --git a/src/LATTE/Install.sh b/src/LATTE/Install.sh
old mode 100644
new mode 100755
diff --git a/src/MEAM/Install.sh b/src/MEAM/Install.sh
old mode 100644
new mode 100755
diff --git a/src/MPIIO/Install.sh b/src/MPIIO/Install.sh
old mode 100644
new mode 100755
diff --git a/src/Make.sh b/src/Make.sh
old mode 100644
new mode 100755
diff --git a/src/OPT/Install.sh b/src/OPT/Install.sh
old mode 100644
new mode 100755
diff --git a/src/POEMS/Install.sh b/src/POEMS/Install.sh
old mode 100644
new mode 100755
diff --git a/src/Package.sh b/src/Package.sh
old mode 100644
new mode 100755
diff --git a/src/QEQ/Install.sh b/src/QEQ/Install.sh
old mode 100644
new mode 100755
diff --git a/src/REAX/Install.sh b/src/REAX/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-AWPMD/Install.sh b/src/USER-AWPMD/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-CGDNA/Install.sh b/src/USER-CGDNA/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-CGSDK/Install.sh b/src/USER-CGSDK/Install.sh
old mode 100644
new mode 100755
index 00f515b794bee82336ac36597bbbafe8a1c17de6..8e2432343dd74fec474044d06ed4ba0e0ca072c5
--- a/src/USER-CGSDK/Install.sh
+++ b/src/USER-CGSDK/Install.sh
@@ -28,8 +28,8 @@ action () {
 
 # list of files with optional dependcies
 
-action angle_sdk.cpp angle_harmonic.cpp
-action angle_sdk.h angle_harmonic.cpp
+action angle_sdk.cpp
+action angle_sdk.h
 action lj_sdk_common.h
 action pair_lj_sdk.cpp
 action pair_lj_sdk.h
diff --git a/src/USER-FEP/Install.sh b/src/USER-FEP/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-H5MD/Install.sh b/src/USER-H5MD/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-INTEL/Install.sh b/src/USER-INTEL/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-MISC/Install.sh b/src/USER-MISC/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-MOLFILE/Install.sh b/src/USER-MOLFILE/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-NETCDF/Install.sh b/src/USER-NETCDF/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-OMP/Install.sh b/src/USER-OMP/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-OMP/hack_openmp_for_pgi.sh b/src/USER-OMP/hack_openmp_for_pgi.sh
old mode 100644
new mode 100755
diff --git a/src/USER-PHONON/Install.sh b/src/USER-PHONON/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-QUIP/Install.sh b/src/USER-QUIP/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-SMD/Install.sh b/src/USER-SMD/Install.sh
old mode 100644
new mode 100755
diff --git a/src/USER-VTK/Install.sh b/src/USER-VTK/Install.sh
old mode 100644
new mode 100755