diff --git a/src/KOKKOS/pppm_kokkos.cpp b/src/KOKKOS/pppm_kokkos.cpp index 5ec454f783d64458847dde0ea070200d2d9b428b..7a02e973b1dac132bbbfeceedfa76e7844cd6e2c 100644 --- a/src/KOKKOS/pppm_kokkos.cpp +++ b/src/KOKKOS/pppm_kokkos.cpp @@ -202,7 +202,7 @@ void PPPMKokkos<DeviceType>::init() if (!atomKK->q_flag) error->all(FLERR,"Kspace style requires atomKK attribute q"); if (slabflag == 0 && domain->nonperiodic > 0) - error->all(FLERR,"Cannot use nonperiodic boundaries with PPPM"); + error->all(FLERR,"Cannot use non-periodic boundaries with PPPM"); if (slabflag) { if (domain->xperiodic != 1 || domain->yperiodic != 1 || domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1) @@ -371,7 +371,7 @@ void PPPMKokkos<DeviceType>::setup() // perform some checks to avoid illegal boundaries with read_data if (slabflag == 0 && domain->nonperiodic > 0) - error->all(FLERR,"Cannot use nonperiodic boundaries with PPPM"); + error->all(FLERR,"Cannot use non-periodic boundaries with PPPM"); if (slabflag) { if (domain->xperiodic != 1 || domain->yperiodic != 1 || domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1) diff --git a/src/KOKKOS/pppm_kokkos.h b/src/KOKKOS/pppm_kokkos.h index db5b8f7ae6d3e5941f167b8dc9c1023315cccf72..21896eb7149291ec2f5a2ad03ba21726d61a6a97 100644 --- a/src/KOKKOS/pppm_kokkos.h +++ b/src/KOKKOS/pppm_kokkos.h @@ -454,7 +454,7 @@ E: Kspace style requires atomKK attribute q UNDOCUMENTED -E: Cannot use nonperiodic boundaries with PPPM +E: Cannot use non-periodic boundaries with PPPM For kspace style pppm, all 3 dimensions must have periodic boundaries unless you use the kspace_modify command to define a 2d slab with a diff --git a/src/KSPACE/ewald.cpp b/src/KSPACE/ewald.cpp index c9c10ab73855099da1e31442acd62dd1be7466cd..a24e3e123db7e38baab99999c062710e0a6bb681 100644 --- a/src/KSPACE/ewald.cpp +++ b/src/KSPACE/ewald.cpp @@ -105,7 +105,7 @@ void Ewald::init() if (!atom->q_flag) error->all(FLERR,"Kspace style requires atom attribute q"); if (slabflag == 0 && domain->nonperiodic > 0) - error->all(FLERR,"Cannot use nonperiodic boundaries with Ewald"); + error->all(FLERR,"Cannot use non-periodic boundaries with Ewald"); if (slabflag) { if (domain->xperiodic != 1 || domain->yperiodic != 1 || domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1) diff --git a/src/KSPACE/ewald.h b/src/KSPACE/ewald.h index 7d520b3ab05455b22000229263bd6ac58e3179fd..ef7ff05675f416e7d6a5a386a67e8c0b69b3a406 100644 --- a/src/KSPACE/ewald.h +++ b/src/KSPACE/ewald.h @@ -99,7 +99,7 @@ E: Kspace style requires atom attribute q The atom style defined does not have these attributes. -E: Cannot use nonperiodic boundaries with Ewald +E: Cannot use non-periodic boundaries with Ewald For kspace style ewald, all 3 dimensions must have periodic boundaries unless you use the kspace_modify command to define a 2d slab with a diff --git a/src/KSPACE/ewald_disp.cpp b/src/KSPACE/ewald_disp.cpp index 0ff8acff6ef18de48162d6bae802ca207997368f..4cbdf7b9cb3612fd43d6284d75fba71df9cf8425 100644 --- a/src/KSPACE/ewald_disp.cpp +++ b/src/KSPACE/ewald_disp.cpp @@ -100,7 +100,7 @@ void EwaldDisp::init() if (domain->dimension == 2) error->all(FLERR,"Cannot use EwaldDisp with 2d simulation"); if (slabflag == 0 && domain->nonperiodic > 0) - error->all(FLERR,"Cannot use nonperiodic boundaries with EwaldDisp"); + error->all(FLERR,"Cannot use non-periodic boundaries with EwaldDisp"); if (slabflag == 1) { if (domain->xperiodic != 1 || domain->yperiodic != 1 || domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1) diff --git a/src/KSPACE/ewald_disp.h b/src/KSPACE/ewald_disp.h index a8dfb5bb20d60338f3ce32c7ffd5379fa2fd7e79..77b03a1ff703cedfb6b29a30da7f9fe36b74fad4 100644 --- a/src/KSPACE/ewald_disp.h +++ b/src/KSPACE/ewald_disp.h @@ -108,7 +108,7 @@ E: Cannot use EwaldDisp with 2d simulation This is a current restriction of this command. -E: Cannot use nonperiodic boundaries with EwaldDisp +E: Cannot use non-periodic boundaries with EwaldDisp For kspace style ewald/disp, all 3 dimensions must have periodic boundaries unless you use the kspace_modify command to define a 2d diff --git a/src/KSPACE/msm.cpp b/src/KSPACE/msm.cpp index ed4abcf077de17b04d9cc73b9a8f5797a3ea373f..d8964ffa670e897a09ac6e3ad83b20726ce0f9fd 100644 --- a/src/KSPACE/msm.cpp +++ b/src/KSPACE/msm.cpp @@ -533,7 +533,7 @@ void MSM::compute(int eflag, int vflag) restriction(n); } - // compute direct interation for top grid level for nonperiodic + // compute direct interation for top grid level for non-periodic // and for second from top grid level for periodic if (active_flag[levels-1]) { @@ -1120,7 +1120,7 @@ void MSM::set_grid_global() if (nx_msm[0] >= OFFSET || ny_msm[0] >= OFFSET || nz_msm[0] >= OFFSET) error->all(FLERR,"MSM grid is too large"); - // compute number of extra grid points needed for nonperiodic boundary conditions + // compute number of extra grid points needed for non-periodic boundary conditions if (domain->nonperiodic) { alpha[0] = -(order/2 - 1); @@ -1254,7 +1254,7 @@ void MSM::set_grid_local() nzlo_out[n] = nlo - order; nzhi_out[n] = nhi + MAX(order,nzhi_direct); - // add extra grid points for nonperiodic boundary conditions + // add extra grid points for non-periodic boundary conditions if (domain->nonperiodic) { diff --git a/src/KSPACE/msm_cg.cpp b/src/KSPACE/msm_cg.cpp index 1139ce495755577f40b7566fc0fbc3eb2fbd7efc..55435e5a6e36cef5a9991273bdcab5472bb18dca 100644 --- a/src/KSPACE/msm_cg.cpp +++ b/src/KSPACE/msm_cg.cpp @@ -199,7 +199,7 @@ void MSMCG::compute(int eflag, int vflag) } - // compute direct interation for top grid level for nonperiodic + // compute direct interation for top grid level for non-periodic // and for second from top grid level for periodic if (active_flag[levels-1]) { diff --git a/src/KSPACE/pppm.cpp b/src/KSPACE/pppm.cpp index 57e030f2558f4901a8f866b162172436ac2d9017..8fd74d00dcc8fc3f08b21c061f418682ac7c31ad 100644 --- a/src/KSPACE/pppm.cpp +++ b/src/KSPACE/pppm.cpp @@ -214,7 +214,7 @@ void PPPM::init() if (!atom->q_flag) error->all(FLERR,"Kspace style requires atom attribute q"); if (slabflag == 0 && domain->nonperiodic > 0) - error->all(FLERR,"Cannot use nonperiodic boundaries with PPPM"); + error->all(FLERR,"Cannot use non-periodic boundaries with PPPM"); if (slabflag) { if (domain->xperiodic != 1 || domain->yperiodic != 1 || domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1) @@ -411,7 +411,7 @@ void PPPM::setup() // perform some checks to avoid illegal boundaries with read_data if (slabflag == 0 && domain->nonperiodic > 0) - error->all(FLERR,"Cannot use nonperiodic boundaries with PPPM"); + error->all(FLERR,"Cannot use non-periodic boundaries with PPPM"); if (slabflag) { if (domain->xperiodic != 1 || domain->yperiodic != 1 || domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1) diff --git a/src/KSPACE/pppm.h b/src/KSPACE/pppm.h index 20ba7c3ff18c9843aded2aa0a09e9f187a0e255b..c9190d9fcabbdbc5a262d63d48913f3b981e090d 100644 --- a/src/KSPACE/pppm.h +++ b/src/KSPACE/pppm.h @@ -235,7 +235,7 @@ E: Kspace style requires atom attribute q The atom style defined does not have these attributes. -E: Cannot use nonperiodic boundaries with PPPM +E: Cannot use non-periodic boundaries with PPPM For kspace style pppm, all 3 dimensions must have periodic boundaries unless you use the kspace_modify command to define a 2d slab with a diff --git a/src/KSPACE/pppm_disp.cpp b/src/KSPACE/pppm_disp.cpp index 9fcfb7d76967aa997fb6fa9feff9cbd5059f10d6..687ea0b3f92baf3497e23b0b6334086b6b59502a 100644 --- a/src/KSPACE/pppm_disp.cpp +++ b/src/KSPACE/pppm_disp.cpp @@ -269,7 +269,7 @@ void PPPMDisp::init() "comm_style brick"); if (slabflag == 0 && domain->nonperiodic > 0) - error->all(FLERR,"Cannot use nonperiodic boundaries with PPPMDisp"); + error->all(FLERR,"Cannot use non-periodic boundaries with PPPMDisp"); if (slabflag == 1) { if (domain->xperiodic != 1 || domain->yperiodic != 1 || domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1) @@ -657,7 +657,7 @@ void PPPMDisp::setup() { if (slabflag == 0 && domain->nonperiodic > 0) - error->all(FLERR,"Cannot use nonperiodic boundaries with PPPMDisp"); + error->all(FLERR,"Cannot use non-periodic boundaries with PPPMDisp"); if (slabflag == 1) { if (domain->xperiodic != 1 || domain->yperiodic != 1 || domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1) diff --git a/src/KSPACE/pppm_disp.h b/src/KSPACE/pppm_disp.h index 8a3fb700e6a763d45d4c4bb650b94bbdfbbd6387..786a865978f5887ddc6580884b40addd9f18a2a8 100644 --- a/src/KSPACE/pppm_disp.h +++ b/src/KSPACE/pppm_disp.h @@ -390,7 +390,7 @@ E: PPPMDisp can only currently be used with comm_style brick This is a current restriction in LAMMPS. -E: Cannot use nonperiodic boundaries with PPPMDisp +E: Cannot use non-periodic boundaries with PPPMDisp For kspace style pppm/disp, all 3 dimensions must have periodic boundaries unless you use the kspace_modify command to define a 2d diff --git a/src/MISC/fix_ttm.cpp b/src/MISC/fix_ttm.cpp index 4e155813778c7f165575b5150501a6d8f86e5fdf..170103b0d0798772f15543069bd59b0619eb984a 100644 --- a/src/MISC/fix_ttm.cpp +++ b/src/MISC/fix_ttm.cpp @@ -199,7 +199,7 @@ void FixTTM::init() if (domain->dimension == 2) error->all(FLERR,"Cannot use fix ttm with 2d simulation"); if (domain->nonperiodic != 0) - error->all(FLERR,"Cannot use nonperiodic boundares with fix ttm"); + error->all(FLERR,"Cannot use non-periodic boundares with fix ttm"); if (domain->triclinic) error->all(FLERR,"Cannot use fix ttm with triclinic box"); diff --git a/src/MISC/fix_ttm.h b/src/MISC/fix_ttm.h index 57d18bcb3ac971ff2fbcdfaad81fb64a5abfec44..9fbae2a418624842d21384e974fe542be24f8fe0 100644 --- a/src/MISC/fix_ttm.h +++ b/src/MISC/fix_ttm.h @@ -130,7 +130,7 @@ E: Cannot use fix ttm with 2d simulation This is a current restriction of this fix due to the grid it creates. -E: Cannot use nonperiodic boundares with fix ttm +E: Cannot use non-periodic boundares with fix ttm This fix requires a fully periodic simulation box. diff --git a/src/SRD/fix_srd.h b/src/SRD/fix_srd.h index e14652e526996f8075e99069158e45882b4097e2..b86b3d9f9bdda119913d68a840cc7b497e9a8ae7 100644 --- a/src/SRD/fix_srd.h +++ b/src/SRD/fix_srd.h @@ -373,7 +373,7 @@ This may indicate a problem with your simulation parameters. E: Big particle in fix srd cannot be point particle -Big particles must be extended spheriods or ellipsoids. +Big particles must be extended spheroids or ellipsoids. E: Cannot use lines with fix srd unless overlap is set diff --git a/src/USER-MISC/fix_ttm_mod.cpp b/src/USER-MISC/fix_ttm_mod.cpp index a423b510e5b5c3995aa44133d0e65f2cf92c3ffa..423ec788c560d2c57445641c06cbce71e12186cc 100644 --- a/src/USER-MISC/fix_ttm_mod.cpp +++ b/src/USER-MISC/fix_ttm_mod.cpp @@ -325,7 +325,7 @@ void FixTTMMod::init() if (domain->dimension == 2) error->all(FLERR,"Cannot use fix ttm/mod with 2d simulation"); if (domain->nonperiodic != 0) - error->all(FLERR,"Cannot use nonperiodic boundares with fix ttm/mod"); + error->all(FLERR,"Cannot use non-periodic boundares with fix ttm/mod"); if (domain->triclinic) error->all(FLERR,"Cannot use fix ttm/mod with triclinic box"); // set force prefactors diff --git a/src/USER-NETCDF/dump_netcdf.cpp b/src/USER-NETCDF/dump_netcdf.cpp index c08bc89d04fd86215be6ecce3f6355a504fbad4a..e4c0115793482efc11e54bd784f664bea89293d9 100644 --- a/src/USER-NETCDF/dump_netcdf.cpp +++ b/src/USER-NETCDF/dump_netcdf.cpp @@ -785,7 +785,7 @@ void DumpNetCDF::write_header(bigint n) cell_angles[2] = acos(cosgamma)*180.0/MY_PI; } - // Recent AMBER conventions say that nonperiodic boundaries should have + // Recent AMBER conventions say that non-periodic boundaries should have // 'cell_lengths' set to zero. for (int dim = 0; dim < 3; dim++) { if (!domain->periodicity[dim]) diff --git a/src/USER-NETCDF/dump_netcdf_mpiio.cpp b/src/USER-NETCDF/dump_netcdf_mpiio.cpp index 0a292d4721b5e5c909375b3e56b7ac991ee01795..733fae10f33d1c536d7ea79e451bb4d856785434 100644 --- a/src/USER-NETCDF/dump_netcdf_mpiio.cpp +++ b/src/USER-NETCDF/dump_netcdf_mpiio.cpp @@ -803,7 +803,7 @@ void DumpNetCDFMPIIO::write_time_and_cell() cell_angles[2] = acos(cosgamma)*180.0/MY_PI; } - // Recent AMBER conventions say that nonperiodic boundaries should have + // Recent AMBER conventions say that non-periodic boundaries should have // 'cell_lengths' set to zero. for (int dim = 0; dim < 3; dim++) { if (!domain->periodicity[dim]) diff --git a/src/USER-OMP/msm_cg_omp.cpp b/src/USER-OMP/msm_cg_omp.cpp index eaff37374206e93883c7f3852acb8cd805f33af6..dee9fd85b61b2d27893e8f8472033ea35d789509 100644 --- a/src/USER-OMP/msm_cg_omp.cpp +++ b/src/USER-OMP/msm_cg_omp.cpp @@ -199,7 +199,7 @@ void MSMCGOMP::compute(int eflag, int vflag) } - // compute direct interation for top grid level for nonperiodic + // compute direct interation for top grid level for non-periodic // and for second from top grid level for periodic if (active_flag[levels-1]) { diff --git a/src/change_box.cpp b/src/change_box.cpp index 93dff387c47ddceb622f20168deaca3c93ca5f83..b7d3cb245fc479aba50080b710a5976d171e9985 100644 --- a/src/change_box.cpp +++ b/src/change_box.cpp @@ -272,7 +272,7 @@ void ChangeBox::command(int narg, char **arg) if (domain->dimension == 2 && domain->zperiodic == 0) error->all(FLERR, "Cannot change box z boundary to " - "nonperiodic for a 2d simulation"); + "non-periodic for a 2d simulation"); domain->set_initial_box(); domain->set_global_box(); domain->set_local_box(); diff --git a/src/change_box.h b/src/change_box.h index d9152b7fb0d71b8556235679a219231a6ec09328..d8a057f9a6063ab66f47bdd6a81434df03120219 100644 --- a/src/change_box.h +++ b/src/change_box.h @@ -97,7 +97,7 @@ E: Cannot change box tilt factors for orthogonal box Cannot use tilt factors unless the simulation box is non-orthogonal. -E: Cannot change box z boundary to nonperiodic for a 2d simulation +E: Cannot change box z boundary to non-periodic for a 2d simulation Self-explanatory. diff --git a/src/create_box.h b/src/create_box.h index 2d94b80d82a3913e302ab39792dc67f8de8f3be8..740769b4de5106d28a00a18bafbe6b551ff7eab8 100644 --- a/src/create_box.h +++ b/src/create_box.h @@ -47,7 +47,7 @@ E: Cannot create_box after simulation box is defined A simulation box can only be defined once. -E: Cannot run 2d simulation with nonperiodic Z dimension +E: Cannot run 2d simulation with non-periodic Z dimension Use the boundary command to make the z dimension periodic in order to run a 2d simulation. diff --git a/src/input.h b/src/input.h index be320a41ecc45096c813d7dcab4ec6705b1cb6b9..080accc1ce7d797cdf0b79122fa42ca1c002ca33 100644 --- a/src/input.h +++ b/src/input.h @@ -337,7 +337,7 @@ after a read_data, read_restart, or create_box command. E: Package command after simulation box is defined -The package command cannot be used afer a read_data, read_restart, or +The package command cannot be used after a read_data, read_restart, or create_box command. E: Package gpu command without GPU package installed diff --git a/src/pair.cpp b/src/pair.cpp index 18d561bdb55230ef2f63f6fc01f600916bcad8ab..cc066713c95b951790f8f445f9bd6df359331357 100644 --- a/src/pair.cpp +++ b/src/pair.cpp @@ -195,7 +195,7 @@ void Pair::init() if (tail_flag && domain->dimension == 2) error->all(FLERR,"Cannot use pair tail corrections with 2d simulations"); if (tail_flag && domain->nonperiodic && comm->me == 0) - error->warning(FLERR,"Using pair tail corrections with nonperiodic system"); + error->warning(FLERR,"Using pair tail corrections with non-periodic system"); if (!compute_flag && tail_flag && comm->me == 0) error->warning(FLERR,"Using pair tail corrections with " "pair_modify compute no"); diff --git a/src/pair.h b/src/pair.h index c1a9e6eef8df3c181a2284f0770ea602266a48cb..27b6d41eef17ec96c4d7dc03c9e2032721ee0c16 100644 --- a/src/pair.h +++ b/src/pair.h @@ -272,7 +272,7 @@ E: Cannot use pair tail corrections with 2d simulations The correction factors are only currently defined for 3d systems. -W: Using pair tail corrections with nonperiodic system +W: Using pair tail corrections with non-periodic system This is probably a bogus thing to do, since tail corrections are computed by integrating the density of a periodic system out to diff --git a/src/read_data.h b/src/read_data.h index 9dce8cfcf581c20a145b3684b1b42f14dde214ef..7d011c710a09b6b966545a153af412d4d704f04b 100644 --- a/src/read_data.h +++ b/src/read_data.h @@ -160,7 +160,7 @@ E: Fix ID for read_data does not exist Self-explanatory. -E: Cannot run 2d simulation with nonperiodic Z dimension +E: Cannot run 2d simulation with non-periodic Z dimension Use the boundary command to make the z dimension periodic in order to run a 2d simulation. diff --git a/src/read_restart.cpp b/src/read_restart.cpp index 6b9ea8d77316b867bb193bc2264ee9b392e51b00..82028d831636827a03a4a8fd7459f43bc8c12ef3 100644 --- a/src/read_restart.cpp +++ b/src/read_restart.cpp @@ -715,7 +715,7 @@ void ReadRestart::header(int incompatible) domain->dimension = dimension; if (domain->dimension == 2 && domain->zperiodic == 0) error->all(FLERR, - "Cannot run 2d simulation with nonperiodic Z dimension"); + "Cannot run 2d simulation with non-periodic Z dimension"); // read nprocs from restart file, warn if different diff --git a/src/read_restart.h b/src/read_restart.h index 8d2547fb1055673945e77b650b7004e6f0f01720..4cee62a1cf4dfab60d6cd9ed32a940e3585f2e19 100644 --- a/src/read_restart.h +++ b/src/read_restart.h @@ -141,7 +141,7 @@ E: Bigint setting in lmptype.h is not compatible Format of bigint stored in restart file is not consistent with LAMMPS version you are running. See the settings in src/lmptype.h -E: Cannot run 2d simulation with nonperiodic Z dimension +E: Cannot run 2d simulation with non-periodic Z dimension Use the boundary command to make the z dimension periodic in order to run a 2d simulation.