diff --git a/src/GRANULAR/fix_wall_gran_region.cpp b/src/GRANULAR/fix_wall_gran_region.cpp
index e9e27b90e6f5b9dce359f7aadae89282a4727352..a09b9dfa421b971df17992722ccc55c1308b1454 100644
--- a/src/GRANULAR/fix_wall_gran_region.cpp
+++ b/src/GRANULAR/fix_wall_gran_region.cpp
@@ -131,9 +131,8 @@ void FixWallGranRegion::init()
void FixWallGranRegion::post_force(int vflag)
{
int i,m,nc,iwall;
- double rinv,fx,fy,fz,tooclose;
double dx,dy,dz,rsq,meff;
- double xc[3],vwall[3];
+ double vwall[3];
// do not update shear history during setup
diff --git a/src/MC/fix_gcmc.cpp b/src/MC/fix_gcmc.cpp
index 780df25bdf7ab95c3dd74c069012165fd52da4f2..a7483a1d00c1b4a6483e22f7a8501121f1c5a31a 100644
--- a/src/MC/fix_gcmc.cpp
+++ b/src/MC/fix_gcmc.cpp
@@ -72,7 +72,7 @@ FixGCMC::FixGCMC(LAMMPS *lmp, int narg, char **arg) :
Fix(lmp, narg, arg),
idregion(NULL), full_flag(0), ngroups(0), groupstrings(NULL), ngrouptypes(0), grouptypestrings(NULL),
grouptypebits(NULL), grouptypes(NULL), local_gas_list(NULL), atom_coord(NULL), random_equal(NULL), random_unequal(NULL),
- coords(NULL), imageflags(NULL), idrigid(NULL), idshake(NULL), fixrigid(NULL), fixshake(NULL)
+ coords(NULL), imageflags(NULL), fixrigid(NULL), fixshake(NULL), idrigid(NULL), idshake(NULL)
{
if (narg < 11) error->all(FLERR,"Illegal fix gcmc command");
diff --git a/src/MOLECULE/fix_cmap.cpp b/src/MOLECULE/fix_cmap.cpp
index 8534a8bf33f1473c8a9303fe93e10a9024f27192..551e049238dfea0f101ec7ad414e3695183d683b 100644
--- a/src/MOLECULE/fix_cmap.cpp
+++ b/src/MOLECULE/fix_cmap.cpp
@@ -964,22 +964,22 @@ void FixCMAP::bc_coeff(double *gs, double *d1gs, double *d2gs, double *d12gs)
// calculate the bicubic interpolation coefficients c_ij
static int wt[16][16] =
- { 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
- 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0,
- -3, 0, 0, 3, 0, 0, 0, 0,-2, 0, 0,-1, 0, 0, 0, 0,
- 2, 0, 0,-2, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0,
- 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
- 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0,
- 0, 0, 0, 0,-3, 0, 0, 3, 0, 0, 0, 0,-2, 0, 0,-1,
- 0, 0, 0, 0, 2, 0, 0,-2, 0, 0, 0, 0, 1, 0, 0, 1,
- -3, 3, 0, 0,-2,-1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
- 0, 0, 0, 0, 0, 0, 0, 0,-3, 3, 0, 0,-2,-1, 0, 0,
- 9,-9, 9,-9, 6, 3,-3,-6, 6,-6,-3, 3, 4, 2, 1, 2,
- -6, 6,-6, 6,-4,-2, 2, 4,-3, 3, 3,-3,-2,-1,-1,-2,
- 2,-2, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
- 0, 0, 0, 0, 0, 0, 0, 0, 2,-2, 0, 0, 1, 1, 0, 0,
- -6, 6,-6, 6,-3,-3, 3, 3,-4, 4, 2,-2,-2,-2,-1,-1,
- 4,-4, 4,-4, 2, 2,-2,-2, 2,-2,-2, 2, 1, 1, 1, 1
+ { {1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
+ {0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0},
+ {-3, 0, 0, 3, 0, 0, 0, 0,-2, 0, 0,-1, 0, 0, 0, 0},
+ {2, 0, 0,-2, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0},
+ {0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
+ {0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0},
+ {0, 0, 0, 0,-3, 0, 0, 3, 0, 0, 0, 0,-2, 0, 0,-1},
+ {0, 0, 0, 0, 2, 0, 0,-2, 0, 0, 0, 0, 1, 0, 0, 1},
+ {-3, 3, 0, 0,-2,-1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
+ {0, 0, 0, 0, 0, 0, 0, 0,-3, 3, 0, 0,-2,-1, 0, 0},
+ {9,-9, 9,-9, 6, 3,-3,-6, 6,-6,-3, 3, 4, 2, 1, 2},
+ {-6, 6,-6, 6,-4,-2, 2, 4,-3, 3, 3,-3,-2,-1,-1,-2},
+ {2,-2, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},
+ {0, 0, 0, 0, 0, 0, 0, 0, 2,-2, 0, 0, 1, 1, 0, 0},
+ {-6, 6,-6, 6,-3,-3, 3, 3,-4, 4, 2,-2,-2,-2,-1,-1},
+ {4,-4, 4,-4, 2, 2,-2,-2, 2,-2,-2, 2, 1, 1, 1, 1}
};
int i, j, k, in;
diff --git a/src/OPT/pair_eam_opt.cpp b/src/OPT/pair_eam_opt.cpp
index e970f90ae825a6ce803928b02deab5679f12eac4..3afec5644a70bb12497163d8fd8174202f2d11b1 100644
--- a/src/OPT/pair_eam_opt.cpp
+++ b/src/OPT/pair_eam_opt.cpp
@@ -67,11 +67,6 @@ void PairEAMOpt::eval()
double rhor0j,rhor1j,rhor2j,rhor3j;
} fast_alpha_t;
- typedef struct {
- double frho0,frho1,frho2,frho3,frho4,frho5,frho6;
- double _pad[1];
- } fast_beta_t;
-
typedef struct {
double rhor4i,rhor5i,rhor6i;
double rhor4j,rhor5j,rhor6j;
diff --git a/src/QEQ/fix_qeq_dynamic.cpp b/src/QEQ/fix_qeq_dynamic.cpp
index 8e8247e121b4dad2a6cfa0f7867f0bf6bec40674..5408db650b0dfb0a051e18733f761190392034bf 100644
--- a/src/QEQ/fix_qeq_dynamic.cpp
+++ b/src/QEQ/fix_qeq_dynamic.cpp
@@ -249,7 +249,7 @@ double FixQEqDynamic::compute_eneg()
int FixQEqDynamic::pack_forward_comm(int n, int *list, double *buf,
int pbc_flag, int *pbc)
{
- int m;
+ int m=0;
if( pack_flag == 1 )
for(m = 0; m < n; m++) buf[m] = atom->q[list[m]];
diff --git a/src/USER-DPD/fix_rx.cpp b/src/USER-DPD/fix_rx.cpp
index 94c03705d62f2f9ced97b03c0c79569f5fc70534..82bb44a24d12386f486fad077afaeced81f09761 100644
--- a/src/USER-DPD/fix_rx.cpp
+++ b/src/USER-DPD/fix_rx.cpp
@@ -666,7 +666,6 @@ void FixRX::setup_pre_force(int vflag)
int *mask = atom->mask;
int newton_pair = force->newton_pair;
double tmp;
- int ii;
if(restartFlag){
restartFlag = 0;
diff --git a/src/USER-DPD/npair_half_bin_newton_ssa.cpp b/src/USER-DPD/npair_half_bin_newton_ssa.cpp
index fd67b66e9b89a2ce3ca086e54fecec93c6d12480..59acbda301403c5e36e513b03a2df7e4608e90c2 100644
--- a/src/USER-DPD/npair_half_bin_newton_ssa.cpp
+++ b/src/USER-DPD/npair_half_bin_newton_ssa.cpp
@@ -64,7 +64,6 @@ void NPairHalfBinNewtonSSA::build(NeighList *list)
tagint **special = atom->special;
int **nspecial = atom->nspecial;
int nlocal = atom->nlocal;
- int nall = nlocal + atom->nghost;
if (includegroup) nlocal = atom->nfirst;
int *ssaAIR = atom->ssaAIR;
diff --git a/src/USER-DRUDE/pair_lj_cut_thole_long.cpp b/src/USER-DRUDE/pair_lj_cut_thole_long.cpp
index 726baae2400c077075159c2b95cc666cf70124c3..671de7090b3f9ba3e79cadcd98cb43576c3d7cd0 100644
--- a/src/USER-DRUDE/pair_lj_cut_thole_long.cpp
+++ b/src/USER-DRUDE/pair_lj_cut_thole_long.cpp
@@ -640,10 +640,12 @@ double PairLJCutTholeLong::single(int i, int j, int itype, int jtype,
if (j != di_closest){
if (drudetype[i] == CORE_TYPE) dqi = -atom->q[di];
else if (drudetype[i] == DRUDE_TYPE) dqi = atom->q[i];
+ else dqi = 0.0;
if (drudetype[j] == CORE_TYPE) {
dj = atom->map(drudeid[j]);
dqj = -atom->q[dj];
} else if (drudetype[j] == DRUDE_TYPE) dqj = atom->q[j];
+ else dqj = 0.0;
asr = ascreen[itype][jtype] * r;
exp_asr = exp(-asr);
dcoul = force->qqrd2e * dqi * dqj / r;
diff --git a/src/USER-NC-DUMP/dump_nc.cpp b/src/USER-NC-DUMP/dump_nc.cpp
index 825526dde98228a8c1b1500f3e4b17a51b997e98..7a66eb022429da91a6491051ac79d42973cd181c 100644
--- a/src/USER-NC-DUMP/dump_nc.cpp
+++ b/src/USER-NC-DUMP/dump_nc.cpp
@@ -283,9 +283,6 @@ void DumpNC::openfile()
// Fixme! Perform checks if dimensions and variables conform with
// data structure standard.
- size_t index[NC_MAX_VAR_DIMS], count[NC_MAX_VAR_DIMS];
- double d[1];
-
if (singlefile_opened) return;
singlefile_opened = 1;
@@ -924,7 +921,7 @@ int DumpNC::modify_param(int narg, char **arg)
for (int i = 0; iarg < narg; iarg++, i++) {
int n;
- char *suffix;
+ char *suffix=NULL;
if (!strcmp(arg[iarg],"step")) {
perframe[i].type = THIS_IS_A_BIGINT;
diff --git a/src/USER-OMP/fix_nh_asphere_omp.cpp b/src/USER-OMP/fix_nh_asphere_omp.cpp
index d90e907d0e66e28409d3d1ae439210b78bf8c35a..f11b1f5e94946b96cd24fd6d8972ec71d5568561 100644
--- a/src/USER-OMP/fix_nh_asphere_omp.cpp
+++ b/src/USER-OMP/fix_nh_asphere_omp.cpp
@@ -183,7 +183,6 @@ void FixNHAsphereOMP::nh_v_temp()
#pragma omp parallel for default(none) private(i) schedule(static)
#endif
for (i = 0; i < nlocal; i++) {
- double buf[3];
if (mask[i] & groupbit) {
temperature->remove_bias(i,&v[i].x);
v[i].x *= factor_eta;
diff --git a/src/USER-OMP/fix_nh_omp.cpp b/src/USER-OMP/fix_nh_omp.cpp
index 591503d01e11c9315bc2b2c00c85151430aadf36..e77f18304dfdb99ae9fcfa4af60264ec92d55b02 100644
--- a/src/USER-OMP/fix_nh_omp.cpp
+++ b/src/USER-OMP/fix_nh_omp.cpp
@@ -261,7 +261,6 @@ void FixNHOMP::nh_v_press()
#pragma omp parallel for default(none) private(i) schedule(static)
#endif
for (i = 0; i < nlocal; i++) {
- double buf[3];
if (mask[i] & groupbit) {
temperature->remove_bias(i,&v[i].x);
v[i].x *= factor0;
@@ -374,7 +373,6 @@ void FixNHOMP::nh_v_temp()
#pragma omp parallel for default(none) private(i) schedule(static)
#endif
for (i = 0; i < nlocal; i++) {
- double buf[3];
if (mask[i] & groupbit) {
temperature->remove_bias(i,&v[i].x);
v[i].x *= factor_eta;
diff --git a/src/USER-OMP/fix_nh_sphere_omp.cpp b/src/USER-OMP/fix_nh_sphere_omp.cpp
index 5e7890a5133a394e4019b644647f08ca7ce26025..cd06c581ca86f2db34b0afcf08f8ff75450f45a7 100644
--- a/src/USER-OMP/fix_nh_sphere_omp.cpp
+++ b/src/USER-OMP/fix_nh_sphere_omp.cpp
@@ -137,7 +137,6 @@ void FixNHSphereOMP::nh_v_temp()
#pragma omp parallel for default(none) private(i) schedule(static)
#endif
for (i = 0; i < nlocal; i++) {
- double buf[3];
if (mask[i] & groupbit) {
temperature->remove_bias(i,&v[i].x);
v[i].x *= factor_eta;
diff --git a/src/USER-OMP/fix_nvt_sllod_omp.cpp b/src/USER-OMP/fix_nvt_sllod_omp.cpp
index bd704148a5505724c728acf30bd60ea9a01e3540..f233dc459be52d1637ac34ac8abd29c702d88acf 100644
--- a/src/USER-OMP/fix_nvt_sllod_omp.cpp
+++ b/src/USER-OMP/fix_nvt_sllod_omp.cpp
@@ -121,7 +121,7 @@ void FixNVTSllodOMP::nh_v_temp()
#pragma omp parallel for default(none) private(i) shared(h_two) schedule(static)
#endif
for (i = 0; i < nlocal; i++) {
- double vdelu0,vdelu1,vdelu2,buf[3];
+ double vdelu0,vdelu1,vdelu2;
if (mask[i] & groupbit) {
vdelu0 = h_two[0]*v[i].x + h_two[5]*v[i].y + h_two[4]*v[i].z;
vdelu1 = h_two[1]*v[i].y + h_two[3]*v[i].z;
diff --git a/src/USER-OMP/pair_airebo_omp.cpp b/src/USER-OMP/pair_airebo_omp.cpp
index fb1308990fd7c574175c0bd84a9eb5395c5fdab6..84821f1c8c24eb17d13b0506de3649887be2ad08 100644
--- a/src/USER-OMP/pair_airebo_omp.cpp
+++ b/src/USER-OMP/pair_airebo_omp.cpp
@@ -1852,9 +1852,7 @@ double PairAIREBOOMP::bondorderLJ_thr(int i, int j, double rij[3], double rijmag
double rikmag,rjlmag,cosjik,cosijl,g,tmp2,tmp3;
double Etmp,pij,tmp,wij,dwij,NconjtmpI,NconjtmpJ;
double Nki,Nlj,dS,lamdajik,lamdaijl,dgdc,dgdN,pji,Nijconj,piRC;
- double dcosjikdri[3],dcosijldri[3],dcosjikdrk[3];
- double dN2[2],dN3[3];
- double dcosijldrj[3],dcosijldrl[3],dcosjikdrj[3],dwjl;
+ double dN2[2],dN3[3],dwjl;
double Tij,crosskij[3],crosskijmag;
double crossijl[3],crossijlmag,omkijl;
double tmppij,tmppji,dN2PIJ[2],dN2PJI[2],dN3piRC[3],dN3Tij[3];
@@ -1864,16 +1862,16 @@ double PairAIREBOOMP::bondorderLJ_thr(int i, int j, double rij[3], double rijmag
double rlnmag,dwln,r23[3],r23mag,r21[3],r21mag;
double w21,dw21,r34[3],r34mag,cos234,w34,dw34;
double cross321[3],cross234[3],prefactor,SpN;
- double fcijpc,fcikpc,fcjlpc,fcjkpc,fcilpc;
- double dt2dik[3],dt2djl[3],dt2dij[3],aa,aaa1,aaa2,at2,cw,cwnum,cwnom;
+ double fcikpc,fcjlpc,fcjkpc,fcilpc;
+ double dt2dik[3],dt2djl[3],aa,aaa1,aaa2,at2,cw,cwnum,cwnom;
double sin321,sin234,rr,rijrik,rijrjl,rjk2,rik2,ril2,rjl2;
- double dctik,dctjk,dctjl,dctij,dctji,dctil,rik2i,rjl2i,sink2i,sinl2i;
- double rjk[3],ril[3],dt1dik,dt1djk,dt1djl,dt1dil,dt1dij;
+ double dctik,dctjk,dctjl,dctil,rik2i,rjl2i,sink2i,sinl2i;
+ double rjk[3],ril[3],dt1dik,dt1djk,dt1djl,dt1dil;
double dNlj;
double PijS,PjiS;
double rij2,tspjik,dtsjik,tspijl,dtsijl,costmp;
int *REBO_neighs,*REBO_neighs_i,*REBO_neighs_j,*REBO_neighs_k,*REBO_neighs_l;
- double F12[3],F23[3],F34[3],F31[3],F24[3];
+ double F12[3],F34[3],F31[3],F24[3];
double fi[3],fj[3],fk[3],fl[3],f1[3],f2[3],f3[3],f4[4];
double rji[3],rki[3],rlj[3],r13[3],r43[3];
double realrij[3], realrijmag;
diff --git a/src/USER-SMTBQ/pair_smtbq.cpp b/src/USER-SMTBQ/pair_smtbq.cpp
index 5e24ced35cafb72a3db2fbfb41469d645d079c4a..937b9e511736e6e4bbadc7f8d66f251383daa2d0 100644
--- a/src/USER-SMTBQ/pair_smtbq.cpp
+++ b/src/USER-SMTBQ/pair_smtbq.cpp
@@ -3561,7 +3561,7 @@ int PairSMTBQ::Tokenize( char* s, char*** tok )
void PairSMTBQ::CheckEnergyVSForce()
{
- double drL,iq,jq,rsq,evdwlCoul,fpairCoul,eflag,ErepR,frepR,fpair,evdwl;
+ double drL,iq,jq,rsq,evdwlCoul,fpairCoul,eflag=0,ErepR,frepR,fpair,evdwl;
int i,j,iiiMax,iii,iCoord;
int itype,jtype,l,m;
double r,t1,t2,sds,xi,engSurf,fforceSurf;
diff --git a/src/comm_tiled.cpp b/src/comm_tiled.cpp
index 2bdcd0503025dd357babee42e713fa5024206d62..23b098a705a26bb477ab7199688d2375e2034699 100644
--- a/src/comm_tiled.cpp
+++ b/src/comm_tiled.cpp
@@ -1449,7 +1449,7 @@ void CommTiled::box_drop_brick(int idim, double *lo, double *hi, int &indexme)
// NOTE: these error messages are internal sanity checks
// should not occur, can be removed at some point
- int index,dir;
+ int index=-1,dir;
if (hi[idim] == sublo[idim]) {
index = myloc[idim] - 1;
dir = -1;
diff --git a/src/compute_property_local.cpp b/src/compute_property_local.cpp
index 7814b6cb6bb05e598a10e71a1f255f95c846f382..90faa88921271c6e8810617f306fa28954fa9107 100644
--- a/src/compute_property_local.cpp
+++ b/src/compute_property_local.cpp
@@ -35,7 +35,7 @@ enum{TYPE,RADIUS};
ComputePropertyLocal::ComputePropertyLocal(LAMMPS *lmp, int narg, char **arg) :
Compute(lmp, narg, arg),
- indices(NULL), pack_choice(NULL), vlocal(NULL), alocal(NULL)
+ vlocal(NULL), alocal(NULL), indices(NULL), pack_choice(NULL)
{
if (narg < 4) error->all(FLERR,"Illegal compute property/local command");
diff --git a/src/neighbor.cpp b/src/neighbor.cpp
index 8da6c1b9d25452ffe5659bdc0c6aa54d2cf1573c..4cd99b41d7a3c6f24a3a39b0bf20edbc211e3cc3 100644
--- a/src/neighbor.cpp
+++ b/src/neighbor.cpp
@@ -954,7 +954,7 @@ void Neighbor::morph_skip()
int i,j,inewton,jnewton;
NeighRequest *irq,*jrq,*nrq;
- for (int i = 0; i < nrequest; i++) {
+ for (i = 0; i < nrequest; i++) {
irq = requests[i];
// only processing skip lists
@@ -1053,7 +1053,7 @@ void Neighbor::morph_skip()
void Neighbor::morph_granular()
{
int i,j;
- NeighRequest *irq,*jrq,*nrq;
+ NeighRequest *irq,*jrq;
for (i = 0; i < nrequest; i++) {
irq = requests[i];