From d845ef5e8f482e383e8f995b435dc6148df43c30 Mon Sep 17 00:00:00 2001 From: jatempl <jatempl@f3b2605a-c512-4ea7-a41b-209d697bcdaa> Date: Thu, 20 Nov 2014 18:59:07 +0000 Subject: [PATCH] ATC version 2.0, date: Nov20 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12758 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- examples/USER/atc/hardy/consistency.screen | 850 +----- .../atc/hardy/eam_kernel_convergence.screen | 2462 +---------------- .../USER/atc/hardy/eam_unistrain_cell.screen | 78 +- .../USER/atc/hardy/eam_unistrain_mesh.screen | 118 +- .../atc/hardy/eam_unistrain_qcylinder.screen | 75 +- .../atc/hardy/eam_unistrain_qsphere.screen | 75 +- .../USER/atc/hardy/eam_unistrain_step.screen | 117 +- .../USER/atc/hardy/eam_volume_stretch.screen | 121 +- examples/USER/atc/hardy/eshelby_static.screen | 1280 +-------- examples/USER/atc/hardy/nvt.screen | 99 +- 10 files changed, 90 insertions(+), 5185 deletions(-) diff --git a/examples/USER/atc/hardy/consistency.screen b/examples/USER/atc/hardy/consistency.screen index 6f8d61d90d..45ec10d3d3 100644 --- a/examples/USER/atc/hardy/consistency.screen +++ b/examples/USER/atc/hardy/consistency.screen @@ -1,843 +1,11 @@ -LAMMPS (30 Aug 2013) -units metal -atom_style atomic -variable L equal 16 -variable E equal 8 -# create domain -lattice fcc 3.615 origin 0.25 0.25 0.25 -Lattice spacing in x,y,z = 3.615 3.615 3.615 -region mdRegion block 0 $L -3 3 -3 3 -region mdRegion block 0 16 -3 3 -3 3 -boundary p p p -create_box 1 mdRegion -Created orthogonal box = (0 -10.845 -10.845) to (57.84 10.845 10.845) - 4 by 1 by 1 MPI processor grid -# create atoms -create_atoms 1 region mdRegion -Created 2304 atoms -mass 1 63.550 -group internal region mdRegion -2304 atoms in group internal -# specify inter-atomic potential -pair_style eam -pair_coeff * * ../../../../potentials/Cu_u3.eam -# specify neighbor/re-neighboring parameters -neighbor 0.3 bin -#neigh_modify every 10 delay 0 check no -neigh_modify delay 10000 check no -min_modify line quadratic -minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... -Memory usage per processor = 2.95316 Mbytes -Step Temp E_pair E_mol TotEng Press - 0 0 -8156.16 0 -8156.16 -0.027860375 - 1 0 -8156.16 0 -8156.16 -0.027860375 -Loop time of 0.00680125 on 4 procs for 1 steps with 2304 atoms +No protocol specified +-------------------------------------------------------------------------- +mpirun was unable to launch the specified application as it could not access +or execute an executable: -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8156.16000524 -8156.16000524 -8156.16000524 - Force two-norm initial, final = 8.48911e-13 8.39584e-13 - Force max component initial, final = 3.2252e-14 3.01703e-14 - Final line search alpha, max atom move = 1 3.01703e-14 - Iterations, force evaluations = 1 2 +Executable: ../../../lmp_openmpi +Node: mithrandir -Pair time (%) = 0.00625521 (91.9715) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000327826 (4.82008) -Outpt time (%) = 0 (0) -Other time (%) = 0.000218213 (3.20842) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15600 max 15504 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 62208 -Ave neighs/atom = 27 -Neighbor list builds = 0 -Dangerous builds = 0 -# ID group atc PhysicsType ParameterFile -fix AtC internal atc field -ATC: constructing shape function field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 3 -fix_modify AtC mesh create $E 1 1 mdRegion f p p -fix_modify AtC mesh create 8 1 1 mdRegion f p p - ATC: created uniform mesh with 36 nodes, 9 unique nodes, and 8 elements -fix_modify AtC fields none -fix_modify AtC fields add mass_density displacement stress internal_energy eshelby_stress temperature -fix_modify AtC gradients add displacement -fix_modify AtC set reference_potential_energy -#fix_modify AtC hardy_reset 1 -# output -thermo 10 -thermo_style custom step pe ke press lx ly lz -fix_modify AtC output consistencyFE 1 text tensor_components - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: - -# displace atoms -# NOTE we need to figure out how to output post minimize w/o a "run" -# or try to interface with "dump" -# this is fine, no integrator is being used -timestep 0.0 -# initial before minimization? -run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 1 -8156.16 0 -0.027860375 57.84 21.69 21.69 - 2 -8156.16 0 -0.027860375 57.84 21.69 21.69 -Loop time of 0.0255541 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00240105 (9.39598) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000230432 (0.901741) -Outpt time (%) = 0.000131726 (0.515481) -Other time (%) = 0.0227908 (89.1868) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15678 max 15411 min -Histogram: 1 0 0 0 0 2 0 0 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment -variable n equal 10 -variable i loop $n -variable i loop 10 -# NOTE this does not generate KE -label loop_i - change_box all x scale 1.001 remap -Changing box ... - orthogonal box = (-0.02892 -10.845 -10.845) to (57.8689 10.845 10.845) - minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3939 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 2 -8156.1458 0 -1381.2949 57.89784 21.69 21.69 - 3 -8156.1458 0 -1381.2949 57.89784 21.69 21.69 -Loop time of 0.00759006 on 4 procs for 1 steps with 2304 atoms - -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8156.14582163 -8156.14582163 -8156.14582163 - Force two-norm initial, final = 1.20171e-12 7.98441e-13 - Force max component initial, final = 5.47843e-14 2.98234e-14 - Final line search alpha, max atom move = 1 2.98234e-14 - Iterations, force evaluations = 1 2 - -Pair time (%) = 0.00667787 (87.9818) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000374675 (4.93639) -Outpt time (%) = 0 (0) -Other time (%) = 0.000537515 (7.08183) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15597 max 15508 min -Histogram: 1 0 0 0 1 1 0 0 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 - velocity all set 0 0 0 - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 3 -8156.1458 0 -1381.2949 57.89784 21.69 21.69 - 4 -8156.1458 0 -1381.2949 57.89784 21.69 21.69 -Loop time of 0.0305048 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00235128 (7.70792) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000155747 (0.510566) -Outpt time (%) = 0.000559568 (1.83436) -Other time (%) = 0.0274382 (89.9471) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15623 max 15488 min -Histogram: 1 1 0 0 0 0 0 1 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.consistency loop_i - change_box all x scale 1.001 remap -Changing box ... - orthogonal box = (-0.0578689 -10.845 -10.845) to (57.8979 10.845 10.845) - minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3939 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 4 -8156.1033 0 -2755.9958 57.955738 21.69 21.69 - 5 -8156.1033 0 -2755.9958 57.955738 21.69 21.69 -Loop time of 0.00743103 on 4 procs for 1 steps with 2304 atoms - -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8156.10329875 -8156.10329875 -8156.10329875 - Force two-norm initial, final = 1.39476e-12 8.93933e-13 - Force max component initial, final = 1.06757e-13 5.59136e-14 - Final line search alpha, max atom move = 1 5.59136e-14 - Iterations, force evaluations = 1 2 - -Pair time (%) = 0.00667727 (89.8566) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000433147 (5.8289) -Outpt time (%) = 0 (0) -Other time (%) = 0.000320613 (4.31452) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15563 max 15540 min -Histogram: 1 1 0 0 0 0 0 0 0 2 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 - velocity all set 0 0 0 - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 5 -8156.1033 0 -2755.9958 57.955738 21.69 21.69 - 6 -8156.1033 0 -2755.9958 57.955738 21.69 21.69 -Loop time of 0.0286701 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00227046 (7.91927) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000166774 (0.5817) -Outpt time (%) = 0.000535548 (1.86797) -Other time (%) = 0.0256973 (89.6311) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15650 max 15466 min -Histogram: 1 0 0 0 2 0 0 0 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.consistency loop_i - change_box all x scale 1.001 remap -Changing box ... - orthogonal box = (-0.0868468 -10.845 -10.845) to (57.9268 10.845 10.845) - minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3939 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 6 -8156.0325 0 -4124.1199 58.013694 21.69 21.69 - 7 -8156.0325 0 -4124.1199 58.013694 21.69 21.69 -Loop time of 0.00750422 on 4 procs for 1 steps with 2304 atoms - -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8156.03247785 -8156.03247785 -8156.03247785 - Force two-norm initial, final = 2.13199e-12 8.14844e-13 - Force max component initial, final = 1.57712e-13 5.37209e-14 - Final line search alpha, max atom move = 1 5.37209e-14 - Iterations, force evaluations = 1 2 - -Pair time (%) = 0.00677872 (90.332) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00043571 (5.8062) -Outpt time (%) = 0 (0) -Other time (%) = 0.000289798 (3.8618) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15567 max 15532 min -Histogram: 1 0 0 0 0 0 2 0 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 - velocity all set 0 0 0 - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 7 -8156.0325 0 -4124.1199 58.013694 21.69 21.69 - 8 -8156.0325 0 -4124.1199 58.013694 21.69 21.69 -Loop time of 0.0287238 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00232071 (8.07938) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000146508 (0.510058) -Outpt time (%) = 0.000488341 (1.70012) -Other time (%) = 0.0257683 (89.7104) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15659 max 15491 min -Histogram: 2 0 0 1 0 0 0 0 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.consistency loop_i - change_box all x scale 1.001 remap -Changing box ... - orthogonal box = (-0.115854 -10.845 -10.845) to (57.9559 10.845 10.845) - minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3939 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 8 -8155.9334 0 -5485.7179 58.071707 21.69 21.69 - 9 -8155.9334 0 -5485.7179 58.071707 21.69 21.69 -Loop time of 0.00728536 on 4 procs for 1 steps with 2304 atoms - -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8155.93340042 -8155.93340042 -8155.93340042 - Force two-norm initial, final = 1.09341e-12 6.35419e-13 - Force max component initial, final = 5.68295e-14 3.66235e-14 - Final line search alpha, max atom move = 1 3.66235e-14 - Iterations, force evaluations = 1 2 - -Pair time (%) = 0.00666147 (91.4365) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000346005 (4.74932) -Outpt time (%) = 0 (0) -Other time (%) = 0.000277877 (3.81418) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15569 max 15539 min -Histogram: 1 0 0 1 1 0 0 0 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 - velocity all set 0 0 0 - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 9 -8155.9334 0 -5485.7179 58.071707 21.69 21.69 - 10 -8155.9334 0 -5485.7179 58.071707 21.69 21.69 -Loop time of 0.0293248 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00235546 (8.03231) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000166237 (0.566884) -Outpt time (%) = 0.000518978 (1.76976) -Other time (%) = 0.0262841 (89.631) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15643 max 15487 min -Histogram: 1 0 0 2 0 0 0 0 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.consistency loop_i - change_box all x scale 1.001 remap -Changing box ... - orthogonal box = (-0.144889 -10.845 -10.845) to (57.9849 10.845 10.845) - minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3939 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 10 -8155.8061 0 -6840.8461 58.129779 21.69 21.69 - 11 -8155.8061 0 -6840.8461 58.129779 21.69 21.69 -Loop time of 0.00727099 on 4 procs for 1 steps with 2304 atoms - -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8155.80610648 -8155.80610648 -8155.80610648 - Force two-norm initial, final = 1.05408e-12 6.84939e-13 - Force max component initial, final = 5.43732e-14 3.31436e-14 - Final line search alpha, max atom move = 1 3.31436e-14 - Iterations, force evaluations = 1 2 - -Pair time (%) = 0.00667995 (91.8713) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00033623 (4.62426) -Outpt time (%) = 0 (0) -Other time (%) = 0.00025481 (3.50447) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15561 max 15539 min -Histogram: 1 0 0 0 0 1 0 1 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 - velocity all set 0 0 0 - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 11 -8155.8061 0 -6840.8461 58.129779 21.69 21.69 - 12 -8155.8061 0 -6840.8461 58.129779 21.69 21.69 -Loop time of 0.0302055 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00233757 (7.73891) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000163257 (0.540488) -Outpt time (%) = 0.000486493 (1.61061) -Other time (%) = 0.0272182 (90.11) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15606 max 15482 min -Histogram: 1 0 1 0 0 0 0 0 0 2 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.consistency loop_i - change_box all x scale 1.001 remap -Changing box ... - orthogonal box = (-0.173954 -10.845 -10.845) to (58.014 10.845 10.845) - minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3939 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 12 -8155.6506 0 -8189.4905 58.187909 21.69 21.69 - 13 -8155.6506 0 -8189.4905 58.187909 21.69 21.69 -Loop time of 0.00774026 on 4 procs for 1 steps with 2304 atoms - -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8155.65063641 -8155.65063641 -8155.65063641 - Force two-norm initial, final = 1.14329e-12 6.31554e-13 - Force max component initial, final = 7.85249e-14 4.52208e-14 - Final line search alpha, max atom move = 1 4.52208e-14 - Iterations, force evaluations = 1 2 - -Pair time (%) = 0.00686681 (88.7155) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000567853 (7.33636) -Outpt time (%) = 0 (0) -Other time (%) = 0.000305593 (3.9481) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15560 max 15537 min -Histogram: 1 0 0 0 0 0 1 0 0 2 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 - velocity all set 0 0 0 - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 13 -8155.6506 0 -8189.4905 58.187909 21.69 21.69 - 14 -8155.6506 0 -8189.4905 58.187909 21.69 21.69 -Loop time of 0.0298388 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00234622 (7.86298) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000140786 (0.471822) -Outpt time (%) = 0.000484467 (1.62361) -Other time (%) = 0.0268673 (90.0416) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15642 max 15467 min -Histogram: 1 0 1 0 0 0 0 1 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.consistency loop_i - change_box all x scale 1.001 remap -Changing box ... - orthogonal box = (-0.203048 -10.845 -10.845) to (58.043 10.845 10.845) - minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3939 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 14 -8155.467 0 -9531.6689 58.246097 21.69 21.69 - 15 -8155.467 0 -9531.6689 58.246097 21.69 21.69 -Loop time of 0.00734794 on 4 procs for 1 steps with 2304 atoms - -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8155.46703122 -8155.46703122 -8155.46703122 - Force two-norm initial, final = 1.009e-12 7.09731e-13 - Force max component initial, final = 5.45874e-14 4.54584e-14 - Final line search alpha, max atom move = 1 4.54584e-14 - Iterations, force evaluations = 1 2 - -Pair time (%) = 0.00674921 (91.8517) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00032419 (4.41198) -Outpt time (%) = 0 (0) -Other time (%) = 0.000274539 (3.73627) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15572 max 15532 min -Histogram: 1 0 1 0 0 0 0 1 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 - velocity all set 0 0 0 - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 15 -8155.467 0 -9531.6689 58.246097 21.69 21.69 - 16 -8155.467 0 -9531.6689 58.246097 21.69 21.69 -Loop time of 0.0295253 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00237668 (8.04961) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00020659 (0.699703) -Outpt time (%) = 0.00047797 (1.61885) -Other time (%) = 0.0264641 (89.6318) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15669 max 15428 min -Histogram: 1 0 0 1 0 0 0 1 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.consistency loop_i - change_box all x scale 1.001 remap -Changing box ... - orthogonal box = (-0.232171 -10.845 -10.845) to (58.0722 10.845 10.845) - minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3939 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 16 -8155.2553 0 -10867.404 58.304343 21.69 21.69 - 17 -8155.2553 0 -10867.404 58.304343 21.69 21.69 -Loop time of 0.00736821 on 4 procs for 1 steps with 2304 atoms - -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8155.25533188 -8155.25533188 -8155.25533188 - Force two-norm initial, final = 1.43358e-12 7.91452e-13 - Force max component initial, final = 8.69461e-14 3.39728e-14 - Final line search alpha, max atom move = 1 3.39728e-14 - Iterations, force evaluations = 1 2 - -Pair time (%) = 0.00677371 (91.9316) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000338376 (4.59237) -Outpt time (%) = 0 (0) -Other time (%) = 0.000256121 (3.47603) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15577 max 15529 min -Histogram: 2 0 0 0 0 0 0 0 1 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 - velocity all set 0 0 0 - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 17 -8155.2553 0 -10867.404 58.304343 21.69 21.69 - 18 -8155.2553 0 -10867.404 58.304343 21.69 21.69 -Loop time of 0.0307941 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00236946 (7.69453) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000199497 (0.64784) -Outpt time (%) = 0.000513554 (1.6677) -Other time (%) = 0.0277116 (89.9899) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15638 max 15446 min -Histogram: 1 0 0 0 1 0 0 1 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.consistency loop_i - change_box all x scale 1.001 remap -Changing box ... - orthogonal box = (-0.261324 -10.845 -10.845) to (58.1013 10.845 10.845) - minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3939 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 18 -8155.0156 0 -12196.682 58.362647 21.69 21.69 - 19 -8155.0156 0 -12196.682 58.362647 21.69 21.69 -Loop time of 0.00725049 on 4 procs for 1 steps with 2304 atoms - -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8155.01558008 -8155.01558008 -8155.01558008 - Force two-norm initial, final = 1.28582e-12 5.73333e-13 - Force max component initial, final = 7.8125e-14 4.13116e-14 - Final line search alpha, max atom move = 1 4.13116e-14 - Iterations, force evaluations = 1 2 - -Pair time (%) = 0.00671351 (92.5939) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000296533 (4.08984) -Outpt time (%) = 0 (0) -Other time (%) = 0.000240445 (3.31626) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15592 max 15514 min -Histogram: 1 0 1 0 0 0 0 1 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 - velocity all set 0 0 0 - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 19 -8155.0156 0 -12196.682 58.362647 21.69 21.69 - 20 -8155.0156 0 -12196.682 58.362647 21.69 21.69 -Loop time of 0.0297967 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00233924 (7.85069) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00017792 (0.597113) -Outpt time (%) = 0.000502944 (1.68792) -Other time (%) = 0.0267766 (89.8643) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15677 max 15419 min -Histogram: 1 0 0 1 0 0 1 0 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.consistency loop_i - change_box all x scale 1.001 remap -Changing box ... - orthogonal box = (-0.290505 -10.845 -10.845) to (58.1305 10.845 10.845) - minimize 1.e-10 1.e-10 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3939 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 20 -8154.7478 0 -13519.498 58.42101 21.69 21.69 - 21 -8154.7478 0 -13519.498 58.42101 21.69 21.69 -Loop time of 0.00733876 on 4 procs for 1 steps with 2304 atoms - -Minimization stats: - Stopping criterion = energy tolerance - Energy initial, next-to-last, final = - -8154.74781829 -8154.74781829 -8154.74781829 - Force two-norm initial, final = 1.23916e-12 7.54091e-13 - Force max component initial, final = 6.14256e-14 4.77318e-14 - Final line search alpha, max atom move = 1 4.77318e-14 - Iterations, force evaluations = 1 2 - -Pair time (%) = 0.00675911 (92.1015) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000314295 (4.28267) -Outpt time (%) = 0 (0) -Other time (%) = 0.00026536 (3.61587) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15601 max 15502 min -Histogram: 1 0 1 0 0 0 0 1 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 - velocity all set 0 0 0 - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.4019 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 21 -8154.7478 0 -13519.498 58.42101 21.69 21.69 - 22 -8154.7478 0 -13519.498 58.42101 21.69 21.69 -Loop time of 0.0291134 on 4 procs for 1 steps with 2304 atoms - -Pair time (%) = 0.00235003 (8.07199) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000175238 (0.601914) -Outpt time (%) = 0.000495434 (1.70174) -Other time (%) = 0.0260927 (89.6244) - -Nlocal: 576 ave 576 max 576 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1692 ave 1692 max 1692 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 15552 ave 15703 max 15408 min -Histogram: 1 0 1 0 0 0 1 0 0 1 -FullNghs: 31104 ave 31104 max 31104 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 124416 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.consistency loop_i +while attempting to start process rank 0. +-------------------------------------------------------------------------- +4 total processes failed to start diff --git a/examples/USER/atc/hardy/eam_kernel_convergence.screen b/examples/USER/atc/hardy/eam_kernel_convergence.screen index f717769651..45ec10d3d3 100644 --- a/examples/USER/atc/hardy/eam_kernel_convergence.screen +++ b/examples/USER/atc/hardy/eam_kernel_convergence.screen @@ -1,2455 +1,11 @@ -LAMMPS (30 Aug 2013) -log eam_kernel_convergence.log -units metal -dimension 3 -boundary p p p -atom_style atomic -# create system -variable a equal 4.08 -lattice fcc $a -lattice fcc 4.0800000000000000711 -Lattice spacing in x,y,z = 4.08 4.08 4.08 -region SYSTEM block -6 6 -6 6 -6 6 -create_box 1 SYSTEM -Created orthogonal box = (-24.48 -24.48 -24.48) to (24.48 24.48 24.48) - 1 by 2 by 2 MPI processor grid -create_atoms 1 region SYSTEM -Created 6912 atoms -mass 1 196.97 -group internal region SYSTEM -6912 atoms in group internal -# n-th shell at sqrt(n/2) * a for FCC -# distances 1:2.9 2:4.1 3:5.1 4:5.8 5:6.5 -# counts 1:12:12 2:6:18 3:24:42 4:12:54 5:24:78 -pair_style eam -pair_coeff * * ../../../../potentials/Au_u3.eam -# specify neighbor/re-neighboring parameters -neighbor 0.3 bin -neigh_modify delay 1000000 -thermo 10 -thermo_style custom step ke pe pxx pyy pzz pxy -timestep 0.0 -reset_timestep 0 -velocity all set 0.0 0.0 0.0 sum no units box -fix ATC internal atc hardy -ATC: constructing kernel field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 3 -fix_modify ATC mesh create 1 1 1 SYSTEM p p p - ATC: created uniform mesh with 8 nodes, 1 unique nodes, and 1 elements -fix_modify ATC fields none -fix_modify ATC fields add mass_density stress number_density -##fix_modify ATC set reference_potential_energy -fix_modify ATC output eam_kernel_convergenceFE 1 text tensor_components - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: +No protocol specified +-------------------------------------------------------------------------- +mpirun was unable to launch the specified application as it could not access +or execute an executable: -##fix_modify ATC on_the_fly kernel on ## NOTE HACK REJ 8Jan13 temporary -##fix_modify ATC on_the_fly bond on +Executable: ../../../lmp_openmpi +Node: mithrandir -# relative to a -variable d equal 0.1 -variable n equal 60 -variable i loop $n -variable i loop 60 -label loop_i - variable R equal $i*$d - variable R equal 1*$d - variable R equal 1*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 0.10000000000000000555*$a - variable Ra equal 0.10000000000000000555*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 0.40800000000000002931 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 0 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 1 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0388415 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00668323 (17.2064) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000434041 (1.11747) -Outpt time (%) = 0.00015521 (0.3996) -Other time (%) = 0.031569 (81.2765) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 2*$d - variable R equal 2*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 0.2000000000000000111*$a - variable Ra equal 0.2000000000000000111*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 0.81600000000000005862 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 1 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 2 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0444712 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00655448 (14.7387) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000383198 (0.861677) -Outpt time (%) = 0.00036943 (0.830716) -Other time (%) = 0.0371641 (83.5689) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 3*$d - variable R equal 3*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 0.30000000000000004441*$a - variable Ra equal 0.30000000000000004441*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 1.224000000000000199 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 2 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 3 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.04445 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00666296 (14.9898) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000398874 (0.897354) -Outpt time (%) = 0.000319004 (0.717669) -Other time (%) = 0.0370692 (83.3952) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 4*$d - variable R equal 4*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 0.4000000000000000222*$a - variable Ra equal 0.4000000000000000222*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 1.6320000000000001172 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 3 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 4 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0450163 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00657719 (14.6107) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000380218 (0.844623) -Outpt time (%) = 0.000315726 (0.701359) -Other time (%) = 0.0377432 (83.8433) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 5*$d - variable R equal 5*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 0.5*$a - variable Ra equal 0.5*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 2.0400000000000000355 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 4 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 5 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0467604 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00669754 (14.3231) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000395298 (0.845368) -Outpt time (%) = 0.000298798 (0.638998) -Other time (%) = 0.0393688 (84.1926) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 6*$d - variable R equal 6*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 0.60000000000000008882*$a - variable Ra equal 0.60000000000000008882*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 2.4480000000000003979 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 5 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 6 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0444613 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00662082 (14.8912) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000426888 (0.960136) -Outpt time (%) = 0.000336528 (0.756901) -Other time (%) = 0.037077 (83.3917) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 7*$d - variable R equal 7*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 0.70000000000000006661*$a - variable Ra equal 0.70000000000000006661*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 2.8560000000000003162 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 6 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 7 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.043804 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00669903 (15.2932) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000481784 (1.09986) -Outpt time (%) = 0.000290036 (0.662122) -Other time (%) = 0.0363332 (82.9449) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 8*$d - variable R equal 8*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 0.80000000000000004441*$a - variable Ra equal 0.80000000000000004441*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 3.2640000000000002345 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 7 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 8 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0430405 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00658572 (15.3012) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000426412 (0.990723) -Outpt time (%) = 0.000294507 (0.684255) -Other time (%) = 0.0357338 (83.0238) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 9*$d - variable R equal 9*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 0.9000000000000000222*$a - variable Ra equal 0.9000000000000000222*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 3.6720000000000001528 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 8 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 9 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0435542 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00668299 (15.3441) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000415802 (0.954676) -Outpt time (%) = 0.000314295 (0.721618) -Other time (%) = 0.0361412 (82.9796) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 10*$d - variable R equal 10*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 1*$a - variable Ra equal 1*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 4.0800000000000000711 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 9 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 10 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0486593 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00675815 (13.8887) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00060457 (1.24245) -Outpt time (%) = 0.000319958 (0.657547) -Other time (%) = 0.0409766 (84.2113) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 11*$d - variable R equal 11*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 1.1000000000000000888*$a - variable Ra equal 1.1000000000000000888*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 4.4880000000000004334 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 10 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 11 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.043182 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00663495 (15.3651) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000424802 (0.983748) -Outpt time (%) = 0.000311017 (0.720247) -Other time (%) = 0.0358112 (82.9309) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 12*$d - variable R equal 12*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 1.2000000000000001776*$a - variable Ra equal 1.2000000000000001776*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 4.8960000000000007958 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 11 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 12 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0425012 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00653344 (15.3724) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000374615 (0.881422) -Outpt time (%) = 0.000294507 (0.692937) -Other time (%) = 0.0352986 (83.0533) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 13*$d - variable R equal 13*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 1.3000000000000000444*$a - variable Ra equal 1.3000000000000000444*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 5.30400000000000027 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 12 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 13 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0425894 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00661176 (15.5244) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000386238 (0.906887) -Outpt time (%) = 0.00029546 (0.693741) -Other time (%) = 0.035296 (82.8749) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 14*$d - variable R equal 14*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 1.4000000000000001332*$a - variable Ra equal 1.4000000000000001332*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 5.7120000000000006324 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 13 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 14 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0442333 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00668049 (15.1028) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00046289 (1.04647) -Outpt time (%) = 0.000296593 (0.670519) -Other time (%) = 0.0367934 (83.1802) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 15*$d - variable R equal 15*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 1.5*$a - variable Ra equal 1.5*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 6.1200000000000001066 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 14 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 15 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0436885 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00662446 (15.1629) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000436783 (0.999765) -Outpt time (%) = 0.000319958 (0.732361) -Other time (%) = 0.0363073 (83.1049) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 16*$d - variable R equal 16*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 1.6000000000000000888*$a - variable Ra equal 1.6000000000000000888*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 6.528000000000000469 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 15 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 16 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0439955 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00660646 (15.0162) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000481367 (1.09413) -Outpt time (%) = 0.000303268 (0.689317) -Other time (%) = 0.0366044 (83.2003) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 17*$d - variable R equal 17*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 1.7000000000000001776*$a - variable Ra equal 1.7000000000000001776*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 6.9360000000000008313 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 16 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 17 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0434833 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00669628 (15.3997) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000483215 (1.11127) -Outpt time (%) = 0.000315428 (0.725401) -Other time (%) = 0.0359883 (82.7636) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 18*$d - variable R equal 18*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 1.8000000000000000444*$a - variable Ra equal 1.8000000000000000444*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 7.3440000000000003055 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 17 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 18 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0477023 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00672126 (14.09) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000448525 (0.940258) -Outpt time (%) = 0.000302494 (0.634128) -Other time (%) = 0.04023 (84.3356) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 19*$d - variable R equal 19*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 1.9000000000000001332*$a - variable Ra equal 1.9000000000000001332*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 7.7520000000000006679 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 18 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 19 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0470713 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00674224 (14.3234) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000493646 (1.04872) -Outpt time (%) = 0.000291288 (0.618822) -Other time (%) = 0.0395442 (84.009) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 20*$d - variable R equal 20*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 2*$a - variable Ra equal 2*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 8.1600000000000001421 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 19 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 20 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.048237 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00677496 (14.0452) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000567019 (1.17549) -Outpt time (%) = 0.00029999 (0.621909) -Other time (%) = 0.040595 (84.1574) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 21*$d - variable R equal 21*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 2.1000000000000000888*$a - variable Ra equal 2.1000000000000000888*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 8.5680000000000013927 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 20 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 21 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0509337 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00661951 (12.9963) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00161797 (3.17662) -Outpt time (%) = 0.000371218 (0.728826) -Other time (%) = 0.042325 (83.0982) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 22*$d - variable R equal 22*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 2.2000000000000001776*$a - variable Ra equal 2.2000000000000001776*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 8.9760000000000008669 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 21 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 22 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0464286 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.0066936 (14.417) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000405967 (0.874391) -Outpt time (%) = 0.000337005 (0.725856) -Other time (%) = 0.038992 (83.9828) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 23*$d - variable R equal 23*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 2.3000000000000002665*$a - variable Ra equal 2.3000000000000002665*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 9.3840000000000021174 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 22 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 23 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0457432 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00663924 (14.5142) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000397205 (0.868337) -Outpt time (%) = 0.000336826 (0.73634) -Other time (%) = 0.03837 (83.8812) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 24*$d - variable R equal 24*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 2.4000000000000003553*$a - variable Ra equal 2.4000000000000003553*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 9.7920000000000015916 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 23 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 24 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0460812 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00662678 (14.3807) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000387967 (0.84192) -Outpt time (%) = 0.0003317 (0.719816) -Other time (%) = 0.0387347 (84.0576) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 25*$d - variable R equal 25*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 2.5*$a - variable Ra equal 2.5*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 10.199999999999999289 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 24 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 25 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0444973 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00659299 (14.8166) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000383079 (0.860905) -Outpt time (%) = 0.000355303 (0.798484) -Other time (%) = 0.0371659 (83.524) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 26*$d - variable R equal 26*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 2.6000000000000000888*$a - variable Ra equal 2.6000000000000000888*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 10.60800000000000054 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 25 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 26 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0452562 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.006598 (14.5792) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000348926 (0.771001) -Outpt time (%) = 0.000234187 (0.517469) -Other time (%) = 0.0380751 (84.1323) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 27*$d - variable R equal 27*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 2.7000000000000001776*$a - variable Ra equal 2.7000000000000001776*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 11.016000000000001791 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 26 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 27 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0462826 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00662923 (14.3234) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000385463 (0.832847) -Outpt time (%) = 0.000336051 (0.726085) -Other time (%) = 0.0389318 (84.1177) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 28*$d - variable R equal 28*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 2.8000000000000002665*$a - variable Ra equal 2.8000000000000002665*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 11.424000000000001265 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 27 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 28 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0453917 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.0065527 (14.4359) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000399888 (0.88097) -Outpt time (%) = 0.000322282 (0.710002) -Other time (%) = 0.0381169 (83.9731) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 29*$d - variable R equal 29*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 2.9000000000000003553*$a - variable Ra equal 2.9000000000000003553*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 11.832000000000002515 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 28 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 29 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0468631 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00654542 (13.9671) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000425279 (0.907493) -Outpt time (%) = 0.000329494 (0.7031) -Other time (%) = 0.0395629 (84.4223) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 30*$d - variable R equal 30*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 3*$a - variable Ra equal 3*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 12.240000000000000213 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 29 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 30 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0452335 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00657338 (14.5321) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000432432 (0.955999) -Outpt time (%) = 0.000304997 (0.674272) -Other time (%) = 0.0379227 (83.8376) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 31*$d - variable R equal 31*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 3.1000000000000000888*$a - variable Ra equal 3.1000000000000000888*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 12.648000000000001464 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 30 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 31 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0480517 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00655156 (13.6344) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000382543 (0.796106) -Outpt time (%) = 0.000351429 (0.731356) -Other time (%) = 0.0407662 (84.8381) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 32*$d - variable R equal 32*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 3.2000000000000001776*$a - variable Ra equal 3.2000000000000001776*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 13.056000000000000938 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 31 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 32 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0477419 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00654197 (13.7028) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000469983 (0.984423) -Outpt time (%) = 0.000343025 (0.718498) -Other time (%) = 0.040387 (84.5943) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 33*$d - variable R equal 33*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 3.3000000000000002665*$a - variable Ra equal 3.3000000000000002665*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 13.464000000000002188 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 32 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 33 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0460263 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00656921 (14.2727) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000368297 (0.800189) -Outpt time (%) = 0.000332475 (0.722358) -Other time (%) = 0.0387563 (84.2047) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 34*$d - variable R equal 34*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 3.4000000000000003553*$a - variable Ra equal 3.4000000000000003553*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 13.872000000000001663 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 33 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 34 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0473687 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00670165 (14.1478) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000524163 (1.10656) -Outpt time (%) = 0.000349283 (0.737371) -Other time (%) = 0.0397936 (84.0082) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 35*$d - variable R equal 35*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 3.5*$a - variable Ra equal 3.5*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 14.280000000000001137 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 34 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 35 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.046108 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00654757 (14.2005) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000339448 (0.736203) -Outpt time (%) = 0.000317812 (0.689277) -Other time (%) = 0.0389032 (84.374) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 36*$d - variable R equal 36*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 3.6000000000000000888*$a - variable Ra equal 3.6000000000000000888*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 14.688000000000000611 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 35 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 36 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0488273 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00661004 (13.5376) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000516057 (1.0569) -Outpt time (%) = 0.000327706 (0.671154) -Other time (%) = 0.0413735 (84.7344) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 37*$d - variable R equal 37*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 3.7000000000000001776*$a - variable Ra equal 3.7000000000000001776*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 15.096000000000001862 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 36 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 37 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0482109 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00662351 (13.7386) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00036943 (0.766279) -Outpt time (%) = 0.000328839 (0.682085) -Other time (%) = 0.0408891 (84.813) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 38*$d - variable R equal 38*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 3.8000000000000002665*$a - variable Ra equal 3.8000000000000002665*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 15.504000000000001336 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 37 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 38 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0471065 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.006558 (13.9216) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000435412 (0.924314) -Outpt time (%) = 0.000320494 (0.680361) -Other time (%) = 0.0397926 (84.4737) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 39*$d - variable R equal 39*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 3.9000000000000003553*$a - variable Ra equal 3.9000000000000003553*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 15.912000000000002586 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 38 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 39 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0549213 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00675124 (12.2926) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000515997 (0.939521) -Outpt time (%) = 0.00526404 (9.5847) -Other time (%) = 0.04239 (77.1832) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 40*$d - variable R equal 40*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 4*$a - variable Ra equal 4*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 16.320000000000000284 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 39 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 40 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0495687 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00669849 (13.5135) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000469565 (0.947302) -Outpt time (%) = 0.000340939 (0.68781) -Other time (%) = 0.0420597 (84.8513) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 41*$d - variable R equal 41*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 4.1000000000000005329*$a - variable Ra equal 4.1000000000000005329*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 16.728000000000001535 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 40 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 41 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0490418 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.0066058 (13.4697) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000433326 (0.883584) -Outpt time (%) = 0.000357926 (0.729838) -Other time (%) = 0.0416448 (84.9168) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 42*$d - variable R equal 42*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 4.2000000000000001776*$a - variable Ra equal 4.2000000000000001776*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 17.136000000000002785 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 41 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 42 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0508096 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00657028 (12.9312) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000399768 (0.786797) -Outpt time (%) = 0.00033778 (0.664795) -Other time (%) = 0.0435017 (85.6172) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 43*$d - variable R equal 43*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 4.2999999999999998224*$a - variable Ra equal 4.2999999999999998224*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 17.544000000000000483 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 42 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 43 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0507447 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00655782 (12.9232) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000423729 (0.835023) -Outpt time (%) = 0.000360966 (0.711337) -Other time (%) = 0.0434021 (85.5305) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 44*$d - variable R equal 44*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 4.4000000000000003553*$a - variable Ra equal 4.4000000000000003553*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 17.952000000000001734 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 43 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 44 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0505193 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00671071 (13.2835) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00045383 (0.89833) -Outpt time (%) = 0.000358701 (0.710027) -Other time (%) = 0.042996 (85.1082) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 45*$d - variable R equal 45*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 4.5*$a - variable Ra equal 4.5*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 18.359999999999999432 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 44 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 45 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0524542 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.006612 (12.6053) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000409305 (0.780309) -Outpt time (%) = 0.000383735 (0.731561) -Other time (%) = 0.0450492 (85.8829) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 46*$d - variable R equal 46*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 4.6000000000000005329*$a - variable Ra equal 4.6000000000000005329*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 18.768000000000004235 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 45 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 46 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0492374 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00649416 (13.1895) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000331461 (0.67319) -Outpt time (%) = 0.000332773 (0.675853) -Other time (%) = 0.042079 (85.4615) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 47*$d - variable R equal 47*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 4.7000000000000001776*$a - variable Ra equal 4.7000000000000001776*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 19.176000000000001933 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 46 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 47 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0506536 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00669324 (13.2138) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000456214 (0.900655) -Outpt time (%) = 0.000328243 (0.648015) -Other time (%) = 0.0431759 (85.2376) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 48*$d - variable R equal 48*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 4.8000000000000007105*$a - variable Ra equal 4.8000000000000007105*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 19.584000000000003183 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 47 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 48 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0503905 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.0066368 (13.1707) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000430107 (0.853548) -Outpt time (%) = 0.000324786 (0.644538) -Other time (%) = 0.0429988 (85.3312) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 49*$d - variable R equal 49*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 4.9000000000000003553*$a - variable Ra equal 4.9000000000000003553*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 19.992000000000000881 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 48 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 49 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0500505 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00659347 (13.1736) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000380039 (0.759312) -Outpt time (%) = 0.000337005 (0.673329) -Other time (%) = 0.04274 (85.3937) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 50*$d - variable R equal 50*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 5*$a - variable Ra equal 5*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 20.399999999999998579 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 49 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 50 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0518271 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00671631 (12.9591) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000467718 (0.902457) -Outpt time (%) = 0.000360131 (0.69487) -Other time (%) = 0.044283 (85.4436) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 51*$d - variable R equal 51*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 5.1000000000000005329*$a - variable Ra equal 5.1000000000000005329*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 20.808000000000003382 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 50 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 51 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0526264 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00670689 (12.7444) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00036931 (0.701759) -Outpt time (%) = 0.000372231 (0.707309) -Other time (%) = 0.0451779 (85.8466) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 52*$d - variable R equal 52*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 5.2000000000000001776*$a - variable Ra equal 5.2000000000000001776*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 21.21600000000000108 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 51 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 52 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0524865 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.0066576 (12.6844) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000452936 (0.862957) -Outpt time (%) = 0.000351846 (0.670356) -Other time (%) = 0.0450241 (85.7823) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 53*$d - variable R equal 53*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 5.3000000000000007105*$a - variable Ra equal 5.3000000000000007105*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 21.624000000000002331 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 52 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 53 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0540738 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00665456 (12.3064) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000372946 (0.689699) -Outpt time (%) = 0.000340104 (0.628963) -Other time (%) = 0.0467062 (86.3749) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 54*$d - variable R equal 54*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 5.4000000000000003553*$a - variable Ra equal 5.4000000000000003553*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 22.032000000000003581 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 53 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 54 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0548586 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00666082 (12.1418) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000418544 (0.762951) -Outpt time (%) = 0.000342011 (0.623442) -Other time (%) = 0.0474372 (86.4718) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 55*$d - variable R equal 55*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 5.5*$a - variable Ra equal 5.5*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 22.440000000000001279 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 54 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 55 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0522921 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00653929 (12.5053) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000342727 (0.655408) -Outpt time (%) = 0.000322282 (0.616312) -Other time (%) = 0.0450878 (86.223) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 56*$d - variable R equal 56*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 5.6000000000000005329*$a - variable Ra equal 5.6000000000000005329*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 22.84800000000000253 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 55 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 56 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.053045 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00649953 (12.2529) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000308335 (0.581271) -Outpt time (%) = 0.000325024 (0.612733) -Other time (%) = 0.0459121 (86.5531) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 57*$d - variable R equal 57*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 5.7000000000000001776*$a - variable Ra equal 5.7000000000000001776*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 23.256000000000000227 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 56 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 57 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0528077 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.0065245 (12.3552) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000353277 (0.668987) -Outpt time (%) = 0.000313759 (0.594153) -Other time (%) = 0.0456162 (86.3817) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 58*$d - variable R equal 58*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 5.8000000000000007105*$a - variable Ra equal 5.8000000000000007105*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 23.664000000000005031 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 57 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 58 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0526786 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00652826 (12.3926) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000332415 (0.631025) -Outpt time (%) = 0.000316858 (0.601494) -Other time (%) = 0.0455011 (86.3749) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 59*$d - variable R equal 59*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 5.9000000000000003553*$a - variable Ra equal 5.9000000000000003553*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 24.072000000000002728 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 58 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 59 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0535012 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00652122 (12.1889) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000347257 (0.649063) -Outpt time (%) = 0.000323713 (0.605057) -Other time (%) = 0.046309 (86.5569) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i - variable R equal $i*$d - variable R equal 60*$d - variable R equal 60*0.10000000000000000555 - variable Ra equal $R*$a - variable Ra equal 6*$a - variable Ra equal 6*4.0800000000000000711 - fix_modify ATC kernel quartic_sphere ${Ra} - fix_modify ATC kernel quartic_sphere 24.480000000000000426 -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix .done -Memory usage per processor = 18.2282 Mbytes -Step KinEng PotEng Pxx Pyy Pzz Pxy - 59 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 - 60 0 -27164.16 0.0224632 0.0224632 0.0224632 -3.0464385e-13 -Loop time of 0.0536864 on 4 procs for 1 steps with 6912 atoms - -Pair time (%) = 0.00665629 (12.3985) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000488102 (0.909173) -Outpt time (%) = 0.000350952 (0.653707) -Other time (%) = 0.0461911 (86.0387) - -Nlocal: 1728 ave 1728 max 1728 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2463 ave 2463 max 2463 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46656 ave 46656 max 46656 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 93312 ave 93312 max 93312 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 373248 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -next i -jump in.eam_kernel_convergence loop_i +while attempting to start process rank 0. +-------------------------------------------------------------------------- +4 total processes failed to start diff --git a/examples/USER/atc/hardy/eam_unistrain_cell.screen b/examples/USER/atc/hardy/eam_unistrain_cell.screen index 7fad9ae3d8..45ec10d3d3 100644 --- a/examples/USER/atc/hardy/eam_unistrain_cell.screen +++ b/examples/USER/atc/hardy/eam_unistrain_cell.screen @@ -1,71 +1,11 @@ -LAMMPS (30 Aug 2013) -Lattice spacing in x,y,z = 3.615 3.615 3.615 -Created orthogonal box = (-65.07 -10.845 -10.845) to (65.07 10.845 10.845) - 4 by 1 by 1 MPI processor grid -Created 4896 atoms -4608 atoms in group internal -ATC: constructing kernel field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 3 - ATC: created uniform mesh with 40 nodes, 10 unique nodes, and 9 elements -Setting up run ... - ATC: Warning: Using native lammps partitioning - ATC: computing bond matrix ..........done -Memory usage per processor = 34.3603 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 0 -17256.022 0 -2117.8338 130.14 21.69 21.69 - 1 -17256.022 0 -2117.8338 130.14 21.69 21.69 -Loop time of 0.00502104 on 4 procs for 1 steps with 4896 atoms +No protocol specified +-------------------------------------------------------------------------- +mpirun was unable to launch the specified application as it could not access +or execute an executable: -Pair time (%) = 0.00451404 (89.9025) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000368595 (7.34102) -Outpt time (%) = 7.65324e-05 (1.52423) -Other time (%) = 6.18696e-05 (1.23221) +Executable: ../../../lmp_openmpi +Node: mithrandir -Nlocal: 1224 ave 1296 max 1152 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Nghost: 2259 ave 2592 max 1926 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Neighs: 32508 ave 34992 max 29952 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 65016 ave 69984 max 60048 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 260064 -Ave neighs/atom = 53.1176 -Neighbor list builds = 0 -Dangerous builds = 0 -Displacing atoms ... - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: - -Setting up run ... - ATC: Warning: Using native lammps partitioning - ATC: computing bond matrix ..........done -Memory usage per processor = 34.3603 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 1 -17252.771 0 -14787.592 130.14 21.69 21.69 - ATC: Warning: Using native lammps partitioning - 2 -17252.771 0 -14787.592 130.14 21.69 21.69 -Loop time of 0.0564872 on 4 procs for 1 steps with 4896 atoms - -Pair time (%) = 0.00467855 (8.28249) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000373602 (0.661392) -Outpt time (%) = 0.000627637 (1.11111) -Other time (%) = 0.0508074 (89.945) - -Nlocal: 1224 ave 1296 max 1152 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Nghost: 2259 ave 2592 max 1926 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Neighs: 32508 ave 34992 max 29952 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 65016 ave 69984 max 60048 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 260064 -Ave neighs/atom = 53.1176 -Neighbor list builds = 0 -Dangerous builds = 0 +while attempting to start process rank 0. +-------------------------------------------------------------------------- +4 total processes failed to start diff --git a/examples/USER/atc/hardy/eam_unistrain_mesh.screen b/examples/USER/atc/hardy/eam_unistrain_mesh.screen index aaaebaf74b..45ec10d3d3 100644 --- a/examples/USER/atc/hardy/eam_unistrain_mesh.screen +++ b/examples/USER/atc/hardy/eam_unistrain_mesh.screen @@ -1,111 +1,11 @@ -LAMMPS (30 Aug 2013) -log eam_unistrain_mesh -units metal -atom_style atomic -# create domain -lattice fcc 3.615 origin 0.25 0.25 0.25 -Lattice spacing in x,y,z = 3.615 3.615 3.615 -region simRegion block -18 18 -3 3 -3 3 -region feRegion block -18 18 -3 3 -3 3 -boundary f p p -create_box 1 simRegion -Created orthogonal box = (-65.07 -10.845 -10.845) to (65.07 10.845 10.845) - 4 by 1 by 1 MPI processor grid -# create atoms -region mdRegion block -17 17 -3 3 -3 3 -create_atoms 1 region mdRegion -Created 4896 atoms -mass 1 63.550 -atom_modify sort 0 1 -# specify interal atoms -region mdInternal block -16 16 -3 3 -3 3 -group internal region mdInternal -4608 atoms in group internal -# specify inter-atomic potential -pair_style eam -pair_coeff * * ../../../../potentials/Cu_u3.eam -# specify neighbor/re-neighboring parameters -neighbor 0.3 bin -neigh_modify every 10 delay 0 check no -# setup thermal output -thermo 10 -thermo_style custom step pe ke press lx ly lz -# ID group atc PhysicsType ParameterFile -fix AtC internal atc field -ATC: constructing shape function field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 3 -# fix_modify AtC atom_element_map eulerian 1 -fix_modify AtC fields none -fix_modify AtC fields add mass_density displacement stress internal_energy -fix_modify AtC gradients add displacement -fix_modify AtC fields add rotation stretch -# fix_modify AtC on_the_fly kernel on -# ID part keywords nx ny nz region -fix_modify AtC mesh create 9 1 1 feRegion f p p - ATC: created uniform mesh with 40 nodes, 10 unique nodes, and 9 elements -#fix_modify AtC mesh data_decomposition -timestep 0.001 -reset_timestep 0 -run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 22.0758 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 0 -17256.022 0 -2117.8338 130.14 21.69 21.69 - 1 -17256.022 0 -2117.8338 130.14 21.69 21.69 -Loop time of 0.00502497 on 4 procs for 1 steps with 4896 atoms +No protocol specified +-------------------------------------------------------------------------- +mpirun was unable to launch the specified application as it could not access +or execute an executable: -Pair time (%) = 0.00446779 (88.9117) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000370204 (7.3673) -Outpt time (%) = 0.000114799 (2.28456) -Other time (%) = 7.21812e-05 (1.43645) +Executable: ../../../lmp_openmpi +Node: mithrandir -Nlocal: 1224 ave 1296 max 1152 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Nghost: 2259 ave 2592 max 1926 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Neighs: 32508 ave 34992 max 29952 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 65016 ave 69984 max 60048 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 260064 -Ave neighs/atom = 53.1176 -Neighbor list builds = 0 -Dangerous builds = 0 -displace_atoms all ramp x -0.6507 0.6507 x -65.07 65.07 -Displacing atoms ... -fix_modify AtC output eam_unistrain_meshFE 1 text tensor_components - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: - -run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 22.0758 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 1 -17252.771 0 -14787.592 130.14 21.69 21.69 - 2 -17252.771 0 -14787.592 130.14 21.69 21.69 -Loop time of 0.0613153 on 4 procs for 1 steps with 4896 atoms - -Pair time (%) = 0.00466156 (7.60261) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000404179 (0.659181) -Outpt time (%) = 0.00141346 (2.30524) -Other time (%) = 0.0548361 (89.433) - -Nlocal: 1224 ave 1296 max 1152 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Nghost: 2259 ave 2592 max 1926 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Neighs: 32508 ave 34992 max 29952 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 65016 ave 69984 max 60048 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 260064 -Ave neighs/atom = 53.1176 -Neighbor list builds = 0 -Dangerous builds = 0 +while attempting to start process rank 0. +-------------------------------------------------------------------------- +4 total processes failed to start diff --git a/examples/USER/atc/hardy/eam_unistrain_qcylinder.screen b/examples/USER/atc/hardy/eam_unistrain_qcylinder.screen index 0ae5d4d9a2..45ec10d3d3 100644 --- a/examples/USER/atc/hardy/eam_unistrain_qcylinder.screen +++ b/examples/USER/atc/hardy/eam_unistrain_qcylinder.screen @@ -1,68 +1,11 @@ -LAMMPS (30 Aug 2013) -Lattice spacing in x,y,z = 3.615 3.615 3.615 -Created orthogonal box = (-65.07 -10.845 -10.845) to (65.07 10.845 10.845) - 4 by 1 by 1 MPI processor grid -Created 4896 atoms -4608 atoms in group internal -ATC: constructing kernel field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 3 - ATC: created uniform mesh with 40 nodes, 10 unique nodes, and 9 elements -Setting up run ... - ATC: computing bond matrix ..........done -Memory usage per processor = 34.3603 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 0 -17256.022 0 -2117.8338 130.14 21.69 21.69 - 1 -17256.022 0 -2117.8338 130.14 21.69 21.69 -Loop time of 0.004924 on 4 procs for 1 steps with 4896 atoms +No protocol specified +-------------------------------------------------------------------------- +mpirun was unable to launch the specified application as it could not access +or execute an executable: -Pair time (%) = 0.00442356 (89.8367) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00033915 (6.8877) -Outpt time (%) = 8.29101e-05 (1.6838) -Other time (%) = 7.83801e-05 (1.5918) +Executable: ../../../lmp_openmpi +Node: mithrandir -Nlocal: 1224 ave 1296 max 1152 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Nghost: 2259 ave 2592 max 1926 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Neighs: 32508 ave 34992 max 29952 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 65016 ave 69984 max 60048 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 260064 -Ave neighs/atom = 53.1176 -Neighbor list builds = 0 -Dangerous builds = 0 -Displacing atoms ... - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: - -Setting up run ... - ATC: computing bond matrix ..........done -Memory usage per processor = 34.3603 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 1 -17252.771 0 -14787.592 130.14 21.69 21.69 - 2 -17252.771 0 -14787.592 130.14 21.69 21.69 -Loop time of 0.0577895 on 4 procs for 1 steps with 4896 atoms - -Pair time (%) = 0.00456053 (7.89162) -Neigh time (%) = 0 (0) -Comm time (%) = 0.00036943 (0.639268) -Outpt time (%) = 0.000626504 (1.08411) -Other time (%) = 0.052233 (90.385) - -Nlocal: 1224 ave 1296 max 1152 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Nghost: 2259 ave 2592 max 1926 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Neighs: 32508 ave 34992 max 29952 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 65016 ave 69984 max 60048 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 260064 -Ave neighs/atom = 53.1176 -Neighbor list builds = 0 -Dangerous builds = 0 +while attempting to start process rank 0. +-------------------------------------------------------------------------- +4 total processes failed to start diff --git a/examples/USER/atc/hardy/eam_unistrain_qsphere.screen b/examples/USER/atc/hardy/eam_unistrain_qsphere.screen index f9c7532e89..45ec10d3d3 100644 --- a/examples/USER/atc/hardy/eam_unistrain_qsphere.screen +++ b/examples/USER/atc/hardy/eam_unistrain_qsphere.screen @@ -1,68 +1,11 @@ -LAMMPS (30 Aug 2013) -Lattice spacing in x,y,z = 3.615 3.615 3.615 -Created orthogonal box = (-65.07 -10.845 -10.845) to (65.07 10.845 10.845) - 4 by 1 by 1 MPI processor grid -Created 4896 atoms -4608 atoms in group internal -ATC: constructing kernel field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 3 - ATC: created uniform mesh with 40 nodes, 10 unique nodes, and 9 elements -Setting up run ... - ATC: computing bond matrix ..........done -Memory usage per processor = 12.3855 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 0 -17256.022 0 -2117.8338 130.14 21.69 21.69 - 1 -17256.022 0 -2117.8338 130.14 21.69 21.69 -Loop time of 0.00503403 on 4 procs for 1 steps with 4896 atoms +No protocol specified +-------------------------------------------------------------------------- +mpirun was unable to launch the specified application as it could not access +or execute an executable: -Pair time (%) = 0.00445276 (88.4533) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000399053 (7.92711) -Outpt time (%) = 8.45194e-05 (1.67896) -Other time (%) = 9.7692e-05 (1.94063) +Executable: ../../../lmp_openmpi +Node: mithrandir -Nlocal: 1224 ave 1296 max 1152 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Nghost: 2259 ave 2592 max 1926 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Neighs: 32508 ave 34992 max 29952 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 65016 ave 69984 max 60048 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 260064 -Ave neighs/atom = 53.1176 -Neighbor list builds = 0 -Dangerous builds = 0 -Displacing atoms ... - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: - -Setting up run ... - ATC: computing bond matrix ..........done -Memory usage per processor = 12.3855 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 1 -17252.771 0 -14787.592 130.14 21.69 21.69 - 2 -17252.771 0 -14787.592 130.14 21.69 21.69 -Loop time of 0.0662282 on 4 procs for 1 steps with 4896 atoms - -Pair time (%) = 0.00455725 (6.88113) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000357509 (0.539813) -Outpt time (%) = 0.000589728 (0.890449) -Other time (%) = 0.0607237 (91.6886) - -Nlocal: 1224 ave 1296 max 1152 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Nghost: 2259 ave 2592 max 1926 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Neighs: 32508 ave 34992 max 29952 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 65016 ave 69984 max 60048 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 260064 -Ave neighs/atom = 53.1176 -Neighbor list builds = 0 -Dangerous builds = 0 +while attempting to start process rank 0. +-------------------------------------------------------------------------- +4 total processes failed to start diff --git a/examples/USER/atc/hardy/eam_unistrain_step.screen b/examples/USER/atc/hardy/eam_unistrain_step.screen index db0699732f..45ec10d3d3 100644 --- a/examples/USER/atc/hardy/eam_unistrain_step.screen +++ b/examples/USER/atc/hardy/eam_unistrain_step.screen @@ -1,110 +1,11 @@ -LAMMPS (30 Aug 2013) -units metal -atom_style atomic -# create domain -lattice fcc 3.615 origin 0.25 0.25 0.25 -Lattice spacing in x,y,z = 3.615 3.615 3.615 -region simRegion block -18 18 -3 3 -3 3 -region feRegion block -18 18 -3 3 -3 3 -boundary f p p -create_box 1 simRegion -Created orthogonal box = (-65.07 -10.845 -10.845) to (65.07 10.845 10.845) - 4 by 1 by 1 MPI processor grid -# create atoms -region mdRegion block -17 17 -3 3 -3 3 -create_atoms 1 region mdRegion -Created 4896 atoms -mass 1 63.550 -# specify interal atoms -region mdInternal block -16 16 -3 3 -3 3 -group internal region mdInternal -4608 atoms in group internal -# specify inter-atomic potential -pair_style eam -pair_coeff * * ../../../../potentials/Cu_u3.eam -# specify neighbor/re-neighboring parameters -neighbor 0.3 bin -neigh_modify every 10 delay 0 check no -# setup thermal output -thermo 10 -thermo_style custom step pe ke press lx ly lz -# ID group atc PhysicsType ParameterFile -fix AtC internal atc hardy -ATC: constructing kernel field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 3 -fix_modify AtC kernel step 9.0375 -# fix_modify AtC atom_element_map eulerian 1 -fix_modify AtC fields none -fix_modify AtC fields add mass_density displacement stress internal_energy -fix_modify AtC gradients add displacement -# fix_modify AtC on_the_fly kernel on -# fix_modify AtC on_the_fly bond on -# ID part keywords nx ny nz region -fix_modify AtC mesh create 9 1 1 feRegion f p p - ATC: created uniform mesh with 40 nodes, 10 unique nodes, and 9 elements -# equilibrate MD field -timestep 0.001 -reset_timestep 0 -run 1 -Setting up run ... - ATC: computing bond matrix ..........done -Memory usage per processor = 34.3603 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 0 -17256.022 0 -2117.8338 130.14 21.69 21.69 - 1 -17256.022 0 -2117.8338 130.14 21.69 21.69 -Loop time of 0.00491542 on 4 procs for 1 steps with 4896 atoms +No protocol specified +-------------------------------------------------------------------------- +mpirun was unable to launch the specified application as it could not access +or execute an executable: -Pair time (%) = 0.00442022 (89.9257) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000348747 (7.09496) -Outpt time (%) = 6.56247e-05 (1.33508) -Other time (%) = 8.08239e-05 (1.64429) +Executable: ../../../lmp_openmpi +Node: mithrandir -Nlocal: 1224 ave 1296 max 1152 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Nghost: 2259 ave 2592 max 1926 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Neighs: 32508 ave 34992 max 29952 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 65016 ave 69984 max 60048 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 260064 -Ave neighs/atom = 53.1176 -Neighbor list builds = 0 -Dangerous builds = 0 -displace_atoms all ramp x -0.6507 0.6507 x -65.07 65.07 -Displacing atoms ... -fix_modify AtC output eam_unistrain_stepFE 1 text - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: - -run 1 -Setting up run ... - ATC: computing bond matrix ..........done -Memory usage per processor = 34.3603 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 1 -17252.771 0 -14787.592 130.14 21.69 21.69 - 2 -17252.771 0 -14787.592 130.14 21.69 21.69 -Loop time of 0.0609433 on 4 procs for 1 steps with 4896 atoms - -Pair time (%) = 0.00458765 (7.52773) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000336945 (0.552883) -Outpt time (%) = 0.000727952 (1.19447) -Other time (%) = 0.0552908 (90.7249) - -Nlocal: 1224 ave 1296 max 1152 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Nghost: 2259 ave 2592 max 1926 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -Neighs: 32508 ave 34992 max 29952 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 65016 ave 69984 max 60048 min -Histogram: 2 0 0 0 0 0 0 0 0 2 - -Total # of neighbors = 260064 -Ave neighs/atom = 53.1176 -Neighbor list builds = 0 -Dangerous builds = 0 +while attempting to start process rank 0. +-------------------------------------------------------------------------- +4 total processes failed to start diff --git a/examples/USER/atc/hardy/eam_volume_stretch.screen b/examples/USER/atc/hardy/eam_volume_stretch.screen index 66a0b2561c..45ec10d3d3 100644 --- a/examples/USER/atc/hardy/eam_volume_stretch.screen +++ b/examples/USER/atc/hardy/eam_volume_stretch.screen @@ -1,114 +1,11 @@ -LAMMPS (30 Aug 2013) -units metal -atom_style atomic -# create domain -lattice fcc 3.615 origin 0.25 0.25 0.25 -Lattice spacing in x,y,z = 3.615 3.615 3.615 -region simRegion block -3 3 -3 3 -3 3 -region feRegion block -3 3 -3 3 -3 3 -region mdRegion block -3 3 -3 3 -3 3 -region mdInternal block -3 3 -3 3 -3 3 -boundary p p p -create_box 1 simRegion -Created orthogonal box = (-10.845 -10.845 -10.845) to (10.845 10.845 10.845) - 1 by 2 by 2 MPI processor grid -# create atoms -create_atoms 1 region mdRegion -Created 864 atoms -mass 1 63.550 -# specify interal atoms -group internal region mdInternal -864 atoms in group internal -# specify inter-atomic potential -pair_style eam -pair_coeff * * ../../../../potentials/Cu_u3.eam -# specify neighbor/re-neighboring parameters -neighbor 0.3 bin -neigh_modify every 10 delay 0 check no -# setup thermal output -thermo 10 -thermo_style custom step pe ke press lx ly lz -# time integrator -# fix NVE all nve -# ID group atc PhysicsType ParameterFile -fix AtC internal atc field -ATC: constructing shape function field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 3 -fix_modify AtC fields none -fix_modify AtC fields add mass_density -fix_modify AtC fields add internal_energy -fix_modify AtC fields add stress -# ID part keywords nx ny nz region -fix_modify AtC mesh create 2 2 2 feRegion p p p - ATC: created uniform mesh with 27 nodes, 8 unique nodes, and 8 elements -log eam_volume_stretch.log -# equilibrate MD field -timestep 0.0 # 0.001 -reset_timestep 0 -run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 20.2625 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 0 -3058.56 0 -0.027860375 21.69 21.69 21.69 - 1 -3058.56 0 -0.027860375 21.69 21.69 21.69 -Loop time of 0.00117427 on 4 procs for 1 steps with 864 atoms +No protocol specified +-------------------------------------------------------------------------- +mpirun was unable to launch the specified application as it could not access +or execute an executable: -Pair time (%) = 0.000917137 (78.1026) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000172377 (14.6795) -Outpt time (%) = 3.82662e-05 (3.25872) -Other time (%) = 4.64916e-05 (3.95919) +Executable: ../../../lmp_openmpi +Node: mithrandir -Nlocal: 216 ave 216 max 216 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1080 ave 1080 max 1080 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 5832 ave 5832 max 5832 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 11664 ave 11664 max 11664 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 46656 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 -# stretch system -change_box all x scale 1.001 y scale 1.001 z scale 1.001 remap -Changing box ... - orthogonal box = (-10.8558 -10.845 -10.845) to (10.8558 10.845 10.845) - orthogonal box = (-10.8558 -10.8558 -10.845) to (10.8558 10.8558 10.845) - orthogonal box = (-10.8558 -10.8558 -10.8558) to (10.8558 10.8558 10.8558) -fix_modify AtC output eam_volume_stretchFE 1 text tensor_components - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: - -run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 20.2625 Mbytes -Step PotEng KinEng Press Lx Ly Lz - 1 -3058.5204 0 -4126.8763 21.71169 21.71169 21.71169 - 2 -3058.5204 0 -4126.8763 21.71169 21.71169 21.71169 -Loop time of 0.018849 on 4 procs for 1 steps with 864 atoms - -Pair time (%) = 0.000905097 (4.80184) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000151515 (0.803838) -Outpt time (%) = 0.000442207 (2.34605) -Other time (%) = 0.0173501 (92.0483) - -Nlocal: 216 ave 216 max 216 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 1080 ave 1080 max 1080 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 5832 ave 5832 max 5832 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -FullNghs: 11664 ave 11664 max 11664 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 46656 -Ave neighs/atom = 54 -Neighbor list builds = 0 -Dangerous builds = 0 +while attempting to start process rank 0. +-------------------------------------------------------------------------- +4 total processes failed to start diff --git a/examples/USER/atc/hardy/eshelby_static.screen b/examples/USER/atc/hardy/eshelby_static.screen index caba44cb12..45ec10d3d3 100644 --- a/examples/USER/atc/hardy/eshelby_static.screen +++ b/examples/USER/atc/hardy/eshelby_static.screen @@ -1,1273 +1,11 @@ -LAMMPS (30 Aug 2013) -log eshelby_static.log -units metal -dimension 3 -boundary p p p -atom_style atomic -# create system -#lattice fcc 3.615 orient x 1 0 0 orient y 0 1 0 orient z 0 0 1 -#lattice fcc 3.615 origin 0.2 0.2 0.2 orient x 1 0 0 orient y 0 1 0 orient z 0 0 1 -lattice fcc 4.08 origin 0.25 0.25 0.25 -Lattice spacing in x,y,z = 4.08 4.08 4.08 -region SYSTEM block -10 10 -10 10 0 3 -region UPPER block -10 10 0 10 0 3 -region LOWER block -10 0 -10 10 0 3 -create_box 1 SYSTEM -Created orthogonal box = (-40.8 -40.8 0) to (40.8 40.8 12.24) - 2 by 2 by 1 MPI processor grid -create_atoms 1 region SYSTEM -Created 4800 atoms -mass 1 63.55 -group internal region SYSTEM -4800 atoms in group internal -group upper region UPPER -2400 atoms in group upper -group lower region LOWER -2400 atoms in group lower -#pair_style eam -#pair_coeff * * ../../../../potentials/Cu_u3.eam -#pair_style lj/smooth 8.0 10.0 -#pair_coeff * * 10.0 1.5 -pair_style lj/smooth/linear 5.456108274435118 -pair_coeff * * 0.7242785984051078 2.598146797350056 -# define region -region abovecrack block -2.01 2.01 0 8 INF INF units lattice -group abovecrack region abovecrack -384 atoms in group abovecrack -region belowcrack block -2.01 2.01 -8 0 INF INF units lattice -group belowcrack region belowcrack -384 atoms in group belowcrack -neighbor 1.0 bin -neigh_modify delay 1000000 -neigh_modify exclude group abovecrack belowcrack -thermo 10 -compute_modify thermo_temp extra 0 -region FORCECHECK block -6 0 6 10 0 3 -group FORCECHECK region FORCECHECK -288 atoms in group FORCECHECK -compute fxsum FORCECHECK reduce sum fx -compute fysum FORCECHECK reduce sum fy -compute fzsum FORCECHECK reduce sum fz -thermo_style custom step ke pe press c_fxsum c_fysum c_fzsum -thermo_modify format 1 %4i format 2 %3.1g format 3 %20.16g -timestep 0.0 -# (1) minimize the system to get a relaxed configuration -min_modify line quadratic -variable tol equal 1.e-11 -minimize 0.0 ${tol} 100000 1000000 -minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... -Memory usage per processor = 2.89514 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum - 0 0 -18803.88531507588 157.04581 3.4067194e-13 7.5394552e-14 -1.1171619e-15 - 10 0 -18804.05078386973 -167.23257 0.0038622644 -0.02973841 -2.7822961e-14 - 20 0 -18804.05398912934 -154.10675 -0.02209957 -0.079098411 -7.7483013e-14 - 30 0 -18804.05486888189 -133.48818 -0.013415553 0.039069634 1.3330819e-13 - 40 0 -18804.05508909051 -129.97657 -0.025714944 -0.00039124981 2.825702e-14 - 50 0 -18804.05511094083 -130.96286 0.00017302887 -0.00041936437 2.8474273e-14 - 60 0 -18804.05511286108 -130.04134 -8.0562031e-06 0.00040854586 1.4817637e-13 - 70 0 -18804.05511296557 -129.72642 2.4196188e-05 -8.3754634e-05 -8.2968141e-14 - 80 0 -18804.05511297355 -129.64952 -2.8214304e-05 0.00016439854 -1.7192415e-13 - 90 0 -18804.05511297455 -129.62765 -2.763398e-05 -1.3852197e-05 -1.0552489e-13 - 100 0 -18804.05511297478 -129.61925 -5.0791248e-06 -1.5172318e-05 -1.473598e-13 - 110 0 -18804.05511297482 -129.61875 -2.3891669e-07 4.3035847e-06 -8.2480275e-14 - 120 0 -18804.05511297477 -129.61941 4.1478414e-07 -2.9139069e-07 2.8750763e-14 - 130 0 -18804.05511297506 -129.61928 -8.2070128e-08 -1.155778e-08 1.8408353e-14 - 140 0 -18804.05511297482 -129.61924 -4.4570566e-08 2.6123951e-08 1.3097633e-13 - 150 0 -18804.05511297488 -129.61922 -2.699227e-08 2.1606944e-08 -1.1053083e-13 - 160 0 -18804.055112975 -129.61922 6.8667407e-09 9.0120222e-09 -7.0315769e-14 - 170 0 -18804.05511297498 -129.61922 3.88537e-09 3.1573261e-09 -1.5273464e-13 - 180 0 -18804.0551129748 -129.61922 3.7525026e-10 -2.6212562e-10 9.9078408e-14 - 190 0 -18804.05511297483 -129.61922 5.6720697e-12 8.8140874e-12 -4.9151834e-14 - 200 0 -18804.05511297479 -129.61922 -5.3396542e-11 3.7182177e-11 1.0315588e-13 - 210 0 -18804.05511297483 -129.61922 -7.4321343e-12 3.6389846e-12 1.5270715e-13 - 217 0 -18804.05511297483 -129.61922 -8.7495582e-13 -9.0918848e-13 -1.5813771e-13 -Loop time of 1.27546 on 4 procs for 217 steps with 4800 atoms +No protocol specified +-------------------------------------------------------------------------- +mpirun was unable to launch the specified application as it could not access +or execute an executable: -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18803.8853151 -18804.055113 -18804.055113 - Force two-norm initial, final = 2.91621 9.94487e-12 - Force max component initial, final = 0.331329 4.98176e-13 - Final line search alpha, max atom move = 1 4.98176e-13 - Iterations, force evaluations = 217 434 +Executable: ../../../lmp_openmpi +Node: mithrandir -Pair time (%) = 1.07709 (84.4473) -Neigh time (%) = 0 (0) -Comm time (%) = 0.15181 (11.9023) -Outpt time (%) = 0.00254393 (0.199451) -Other time (%) = 0.0440157 (3.45096) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46555.5 ave 46908 max 46203 min -Histogram: 1 1 0 0 0 0 0 0 1 1 - -Total # of neighbors = 186222 -Ave neighs/atom = 38.7963 -Neighbor list builds = 0 -Dangerous builds = 0 -write_restart eshelby.restart -System init for write_restart ... -# (2) pull crack apart -reset_timestep 0 -fix PK1 internal atc field -ATC: constructing shape function field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 6 -# NOTE tune this relative to lattice size -fix_modify PK1 mesh create 10 10 1 SYSTEM p f p - ATC: created uniform mesh with 242 nodes, 110 unique nodes, and 100 elements -fix_modify PK1 fields none -fix_modify PK1 fields add mass_density internal_energy temperature stress displacement -fix_modify PK1 fields add eshelby_stress transformed_stress -fix_modify PK1 gradients add displacement -fix_modify PK1 set reference_potential_energy -fix_modify PK1 output eshelby_staticFE 1 text binary tensor_components - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: - -#fix_modify PK1 on_the_fly -#-- make concentric loops around one/both of the crack tips -#-- & another around undefected material (loop0) -fix_modify PK1 mesh create_faceset loop0 box -6 0 6 10 -INF INF outward - ATC: created faceset loop0 with 10 faces -fix_modify PK1 output boundary_integral eshelby_stress faceset loop0 -fix_modify PK1 output boundary_integral stress faceset loop0 -fix_modify PK1 output boundary_integral internal_energy faceset loop0 -#fix_modify PK1 output boundary_integral displacement_gradient faceset loop0 -fix_modify PK1 mesh create_faceset loop1 box -6 0 -2 2 -INF INF outward - ATC: created faceset loop1 with 10 faces -fix_modify PK1 output boundary_integral eshelby_stress faceset loop1 -fix_modify PK1 output boundary_integral stress faceset loop1 -fix_modify PK1 output boundary_integral internal_energy faceset loop1 -#fix_modify PK1 output boundary_integral displacement_gradient faceset loop1 -fix_modify PK1 mesh create_faceset loop2 box -8 0 -4 4 -INF INF outward - ATC: created faceset loop2 with 16 faces -fix_modify PK1 output boundary_integral eshelby_stress faceset loop2 -fix_modify PK1 output boundary_integral stress faceset loop2 -fix_modify PK1 output boundary_integral internal_energy faceset loop2 -#fix_modify PK1 output boundary_integral displacement_gradient faceset loop2 -fix_modify PK1 mesh create_faceset loop3 box -10 0 -6 6 -INF INF outward - ATC: created faceset loop3 with 22 faces -fix_modify PK1 output boundary_integral eshelby_stress faceset loop3 -fix_modify PK1 output boundary_integral stress faceset loop3 -fix_modify PK1 output boundary_integral internal_energy faceset loop3 -#fix_modify PK1 output boundary_integral displacement_gradient faceset loop3 -fix_modify PK1 mesh create_faceset loop4 box 0 8 -6 6 -INF INF outward - ATC: created faceset loop4 with 20 faces -fix_modify PK1 output boundary_integral eshelby_stress faceset loop4 -fix_modify PK1 output boundary_integral stress faceset loop4 -fix_modify PK1 output boundary_integral internal_energy faceset loop4 -#fix_modify PK1 output boundary_integral displacement_gradient faceset loop4 -#-- compute across crack jumps in displacement -#fix PK1upper internal atc hardy -#fix_modify PK1upper mesh create 10 5 1 UPPER p f p -#fix_modify PK1upper fields none -#fix_modify PK1upper fields add displacement -#fix PK1lower lower atc hardy -#fix_modify PK1lower mesh create 10 5 1 LOWER p f p -#fix_modify PK1lower fields none -#fix_modify PK1lower fields add displacement -# initial (1) -run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.6491 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum - 0 0 -18804.05511297483 -129.61922 -8.7410388e-13 -9.0953256e-13 -1.5920078e-13 - 1 0 -18804.05511297483 -129.61922 -8.7410388e-13 -9.0953256e-13 -1.5920078e-13 -Loop time of 0.109182 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.00274354 (2.51282) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000295699 (0.270831) -Outpt time (%) = 0.000140786 (0.128947) -Other time (%) = 0.106002 (97.0874) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 46429.5 ave 46491 max 46397 min -Histogram: 2 0 0 1 0 0 0 0 0 1 -FullNghs: 92859 ave 92859 max 92859 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 371436 -Ave neighs/atom = 77.3825 -Neighbor list builds = 0 -Dangerous builds = 0 -# increment (2) -variable L equal 20 -variable n equal 10 -variable i loop $n -variable i loop 10 -# NOTE this does not generate KE -# NOTE crack is complete at i =8 / 10 -variable s equal 0.08*$L/$n -variable s equal 0.08*20/$n -variable s equal 0.08*20/10 -label loop_i - variable strain equal $i*$s - variable strain equal 1*$s - variable strain equal 1*0.16000000000000000333 - print ">>> step $i, total strain ${strain}" ->>> step 1, total strain 0.16000000000000000333 - change_box all y delta 0 $s remap units lattice - change_box all y delta 0 0.16000000000000000333 remap units lattice -Changing box ... - orthogonal box = (-40.8 -40.8 0) to (40.8 41.4528 12.24) - minimize 0.0 ${tol} 100000 1000000 - minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3358 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum - 1 0 -18796.24699487574 -27029.118 0.0043960333 -0.0014055346 -2.1929333e-13 - 10 0 -18796.59340724873 -25837.901 0.003228698 -0.0079514347 2.0472166e-13 - 20 0 -18796.6674229111 -25563.184 -0.41208254 0.60939356 -2.0133201e-14 - 30 0 -18796.68137488175 -25530.748 -0.10427399 0.046278834 1.8345742e-13 - 40 0 -18796.68416289275 -25532.787 0.037932219 6.742707e-05 -8.1854662e-14 - 50 0 -18796.68482000328 -25530.1 -0.017743055 -0.022407353 1.3725132e-13 - 60 0 -18796.68490342712 -25529.455 -0.0020694891 -0.00021194339 8.87658e-15 - 70 0 -18796.68490563928 -25529.029 -0.00025956468 0.00076638248 6.737666e-15 - 80 0 -18796.68490592246 -25528.794 0.00018670711 0.00010345638 2.3358052e-14 - 90 0 -18796.68490596423 -25528.665 5.7402299e-05 -0.00011112274 3.9048625e-14 - 100 0 -18796.68490596863 -25528.714 4.3186467e-05 -1.5316686e-05 -1.7127619e-13 - 110 0 -18796.68490597046 -25528.743 -1.6546701e-05 2.5136036e-06 4.4969237e-14 - 120 0 -18796.68490597065 -25528.748 -7.9352058e-06 1.4659191e-06 4.516873e-14 - 130 0 -18796.68490597036 -25528.748 4.8463939e-07 -6.647491e-07 -8.9565508e-14 - 140 0 -18796.68490597038 -25528.747 1.4258574e-07 2.4166009e-07 -1.0210062e-13 - 150 0 -18796.6849059704 -25528.746 -1.5186279e-07 3.3560936e-07 4.9280025e-14 - 160 0 -18796.68490597036 -25528.746 -1.3274959e-07 -7.2180252e-08 -7.3246964e-14 - 170 0 -18796.6849059705 -25528.746 -2.2715599e-08 -5.7380609e-09 3.1984831e-14 - 180 0 -18796.68490597034 -25528.746 9.6442526e-09 6.3084056e-09 1.0609569e-14 - 190 0 -18796.68490597043 -25528.746 -3.5484652e-11 2.9988142e-09 -2.1633736e-14 - 200 0 -18796.68490597063 -25528.746 -5.2937969e-10 -7.7295492e-10 -5.912458e-14 - 210 0 -18796.68490597045 -25528.746 3.0338545e-10 4.6398359e-10 3.7685133e-14 - 220 0 -18796.68490597037 -25528.746 1.5461683e-10 -8.041256e-11 -4.610895e-15 - 230 0 -18796.6849059705 -25528.746 -9.2570447e-12 -6.5234379e-11 -5.6801785e-14 - 240 0 -18796.68490597055 -25528.746 -1.9896646e-11 3.3817194e-11 9.6343072e-14 - 249 0 -18796.68490597057 -25528.746 3.4677051e-13 6.539951e-12 -8.5036145e-15 -Loop time of 1.39495 on 4 procs for 248 steps with 4800 atoms - -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18796.2469949 -18796.684906 -18796.684906 - Force two-norm initial, final = 1.3176 9.93035e-12 - Force max component initial, final = 0.199684 4.01235e-13 - Final line search alpha, max atom move = 1 4.01235e-13 - Iterations, force evaluations = 248 496 - -Pair time (%) = 1.1792 (84.5339) -Neigh time (%) = 0 (0) -Comm time (%) = 0.160825 (11.5291) -Outpt time (%) = 0.0029304 (0.210073) -Other time (%) = 0.0519891 (3.72697) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 38613 ave 38650 max 38593 min -Histogram: 1 1 1 0 0 0 0 0 0 1 -FullNghs: 77226 ave 77226 max 77226 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 308904 -Ave neighs/atom = 64.355 -Neighbor list builds = 0 -Dangerous builds = 0 -# reset_timestep $i - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.6491 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum - 249 0 -18796.68490597057 -25528.746 3.4668762e-13 6.5399934e-12 -9.027501e-15 - 250 0 -18796.68490597057 -25528.746 3.4668762e-13 6.5399934e-12 -9.027501e-15 -Loop time of 0.118351 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.0027042 (2.2849) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000363529 (0.307162) -Outpt time (%) = 0.00698376 (5.90089) -Other time (%) = 0.108299 (91.507) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 39234 ave 39251 max 39210 min -Histogram: 1 0 0 0 0 1 0 1 0 1 -FullNghs: 78468 ave 78468 max 78468 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 313872 -Ave neighs/atom = 65.39 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.eshelby_static loop_i - variable strain equal $i*$s - variable strain equal 2*$s - variable strain equal 2*0.16000000000000000333 - print ">>> step $i, total strain ${strain}" ->>> step 2, total strain 0.32000000000000000666 - change_box all y delta 0 $s remap units lattice - change_box all y delta 0 0.16000000000000000333 remap units lattice -Changing box ... - orthogonal box = (-40.8 -40.8 0) to (40.8 42.1056 12.24) - minimize 0.0 ${tol} 100000 1000000 - minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3358 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum - 250 0 -18774.7608425896 -50163.01 0.022793727 -0.0011966205 -6.9763639e-14 - 260 0 -18775.11815298796 -48920.946 -0.0020464819 0.054982281 -1.2962201e-13 - 270 0 -18775.18252080679 -48678.889 -0.34679638 0.69588603 -1.2788208e-13 - 280 0 -18775.19462114314 -48656.554 -0.076015057 0.089569497 -1.744941e-13 - 290 0 -18775.19691196808 -48656.927 0.035624013 0.00032299188 7.0958864e-14 - 300 0 -18775.19746441122 -48656.203 -0.017029282 -0.019207942 -1.6668958e-13 - 310 0 -18775.19753012962 -48655.78 -0.00092746818 -0.00063117528 -4.9509008e-14 - 320 0 -18775.1975322318 -48655.465 -0.00035233821 0.00035846818 1.1448481e-13 - 330 0 -18775.19753254089 -48655.282 0.00031000783 4.2978579e-05 4.7592139e-14 - 340 0 -18775.19753260198 -48655.198 0.00012092645 -0.0001956234 -6.6075617e-14 - 350 0 -18775.19753260996 -48655.259 8.355958e-05 -6.1522389e-05 -2.3907959e-14 - 360 0 -18775.19753261247 -48655.294 -3.6272959e-05 -3.2757726e-05 6.0155006e-14 - 370 0 -18775.19753261278 -48655.307 -1.201859e-06 1.8229791e-06 7.0894679e-14 - 380 0 -18775.19753261278 -48655.306 3.3337492e-07 -1.4066916e-06 6.4266301e-14 - 390 0 -18775.19753261297 -48655.305 -1.9304843e-07 3.1853504e-07 -7.5422307e-14 - 400 0 -18775.1975326128 -48655.305 -4.3810387e-07 3.5975388e-07 -2.9199212e-13 - 410 0 -18775.19753261264 -48655.305 -7.4599947e-08 -2.1594499e-08 1.7863662e-13 - 420 0 -18775.19753261279 -48655.305 -9.5193689e-08 -3.6461161e-08 -2.0470257e-13 - 430 0 -18775.19753261263 -48655.305 4.6607151e-08 8.6445473e-09 9.6754202e-14 - 440 0 -18775.1975326129 -48655.305 2.4237351e-09 -1.2429845e-09 1.0966575e-13 - 450 0 -18775.19753261285 -48655.305 8.1342633e-10 -5.063303e-10 -7.5980888e-15 - 460 0 -18775.19753261275 -48655.305 -1.1228805e-10 1.0966651e-09 -1.9831879e-13 - 470 0 -18775.1975326128 -48655.305 3.6006653e-10 -4.1751033e-10 7.1487954e-14 - 480 0 -18775.1975326128 -48655.305 -7.0608855e-11 -7.7232654e-11 1.1836886e-13 - 490 0 -18775.19753261282 -48655.305 -2.1050048e-11 2.8067392e-11 6.9531186e-14 - 500 0 -18775.19753261291 -48655.305 -1.3303657e-12 1.0812714e-11 -3.0850322e-14 - 502 0 -18775.19753261292 -48655.305 -2.2029077e-12 8.0001559e-12 7.7080703e-14 -Loop time of 1.40186 on 4 procs for 252 steps with 4800 atoms - -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18774.7608426 -18775.1975326 -18775.1975326 - Force two-norm initial, final = 1.30136 8.69208e-12 - Force max component initial, final = 0.197635 3.90715e-13 - Final line search alpha, max atom move = 1 3.90715e-13 - Iterations, force evaluations = 252 504 - -Pair time (%) = 1.18083 (84.233) -Neigh time (%) = 0 (0) -Comm time (%) = 0.165018 (11.7713) -Outpt time (%) = 0.00300181 (0.21413) -Other time (%) = 0.0530118 (3.78153) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36961.5 ave 36975 max 36946 min -Histogram: 1 0 0 0 0 1 1 0 0 1 -FullNghs: 73923 ave 73923 max 73923 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 295692 -Ave neighs/atom = 61.6025 -Neighbor list builds = 0 -Dangerous builds = 0 -# reset_timestep $i - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.6491 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum - 502 0 -18775.19753261291 -48655.305 -2.2034903e-12 7.9996871e-12 7.6945395e-14 - 503 0 -18775.19753261291 -48655.305 -2.2034903e-12 7.9996871e-12 7.6945395e-14 -Loop time of 0.11497 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.00261748 (2.27666) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000340104 (0.295819) -Outpt time (%) = 0.00708228 (6.1601) -Other time (%) = 0.10493 (91.2674) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 37098 ave 37123 max 37065 min -Histogram: 1 0 0 0 0 0 2 0 0 1 -FullNghs: 74196 ave 74196 max 74196 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 296784 -Ave neighs/atom = 61.83 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.eshelby_static loop_i - variable strain equal $i*$s - variable strain equal 3*$s - variable strain equal 3*0.16000000000000000333 - print ">>> step $i, total strain ${strain}" ->>> step 3, total strain 0.47999999999999998224 - change_box all y delta 0 $s remap units lattice - change_box all y delta 0 0.16000000000000000333 remap units lattice -Changing box ... - orthogonal box = (-40.8 -40.8 0) to (40.8 42.7584 12.24) - minimize 0.0 ${tol} 100000 1000000 - minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3358 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum - 503 0 -18740.22094539338 -71179.578 0.042436929 -0.00058766122 5.4461644e-14 - 510 0 -18740.52574537834 -70113.846 0.019892443 -0.0066976455 -1.2749177e-13 - 520 0 -18740.63866698476 -69700.828 -0.43415456 0.62751438 1.5471131e-13 - 530 0 -18740.66253797384 -69635.147 -0.14858913 -0.043191718 4.748632e-14 - 540 0 -18740.6660230413 -69628.118 0.033003494 0.010684797 4.9816054e-14 - 550 0 -18740.66684194138 -69631.698 -0.012343376 -0.022846192 -5.7769761e-14 - 560 0 -18740.66695998782 -69632.27 -0.0038103507 -0.006758347 1.8627461e-14 - 570 0 -18740.66696771383 -69632.317 0.0010108722 0.00038579232 -3.6953079e-14 - 580 0 -18740.66696843877 -69632.193 0.00032732592 -0.00057715667 6.4896005e-14 - 590 0 -18740.66696862285 -69632.144 0.0004393829 -0.00015285667 -1.511534e-13 - 600 0 -18740.66696865366 -69632.2 0.0002718906 8.0751254e-05 -1.3815338e-14 - 610 0 -18740.66696866142 -69632.272 -3.6811401e-05 -6.1493862e-05 -4.1636833e-14 - 620 0 -18740.66696866208 -69632.291 -1.1155812e-05 6.5073211e-06 -5.2661001e-14 - 630 0 -18740.66696866224 -69632.299 -2.8684447e-06 5.8543601e-07 -3.9829251e-14 - 640 0 -18740.66696866222 -69632.297 -7.6240734e-07 -7.3536712e-07 6.2965258e-14 - 650 0 -18740.66696866228 -69632.296 -7.7940189e-07 2.5064706e-06 -1.4706986e-13 - 660 0 -18740.6669686622 -69632.296 3.8750053e-07 1.4372821e-07 -3.1100122e-14 - 670 0 -18740.66696866235 -69632.296 -1.8890263e-07 -1.7245331e-07 -7.3170636e-15 - 680 0 -18740.66696866209 -69632.296 5.9915857e-08 -2.9041318e-08 -7.703907e-14 - 690 0 -18740.66696866221 -69632.296 1.2799751e-08 -1.6205375e-08 -6.2477801e-14 - 700 0 -18740.66696866215 -69632.296 5.0774321e-09 2.1777722e-09 -9.9720579e-14 - 710 0 -18740.66696866214 -69632.296 -1.6058649e-09 4.0847939e-10 1.1093557e-14 - 720 0 -18740.66696866211 -69632.296 2.5047088e-10 -9.5276707e-10 5.3210908e-14 - 730 0 -18740.66696866212 -69632.296 1.5784225e-10 -5.5112915e-11 9.522938e-14 - 740 0 -18740.66696866219 -69632.296 -1.1518922e-10 -2.0835743e-11 1.9975341e-14 - 750 0 -18740.6669686621 -69632.296 -3.8143832e-11 4.6393645e-11 -6.0802058e-14 - 760 0 -18740.66696866212 -69632.296 -9.0617494e-12 1.2776108e-11 1.2775718e-13 - 770 0 -18740.66696866213 -69632.296 -2.5180353e-12 -1.8959756e-12 2.3569688e-14 - 772 0 -18740.66696866214 -69632.296 -5.2109265e-12 -1.9328798e-12 -1.1258355e-14 -Loop time of 1.49037 on 4 procs for 269 steps with 4800 atoms - -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18740.2209454 -18740.6669687 -18740.6669687 - Force two-norm initial, final = 1.28947 9.88499e-12 - Force max component initial, final = 0.19586 3.96302e-13 - Final line search alpha, max atom move = 1 3.96302e-13 - Iterations, force evaluations = 269 538 - -Pair time (%) = 1.25408 (84.1454) -Neigh time (%) = 0 (0) -Comm time (%) = 0.175615 (11.7832) -Outpt time (%) = 0.003214 (0.215651) -Other time (%) = 0.0574645 (3.85571) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36547.5 ave 36589 max 36503 min -Histogram: 1 0 0 1 0 0 1 0 0 1 -FullNghs: 73095 ave 73095 max 73095 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 292380 -Ave neighs/atom = 60.9125 -Neighbor list builds = 0 -Dangerous builds = 0 -# reset_timestep $i - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.6491 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum - 772 0 -18740.66696866215 -69632.296 -5.2107068e-12 -1.9333735e-12 -1.0859369e-14 - 773 0 -18740.66696866215 -69632.296 -5.2107068e-12 -1.9333735e-12 -1.0859369e-14 -Loop time of 0.113133 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.00256819 (2.27005) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000352561 (0.311633) -Outpt time (%) = 0.00667012 (5.8958) -Other time (%) = 0.103543 (91.5225) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36654 ave 36717 max 36596 min -Histogram: 1 1 0 0 0 0 0 1 0 1 -FullNghs: 73308 ave 73308 max 73308 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 293232 -Ave neighs/atom = 61.09 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.eshelby_static loop_i - variable strain equal $i*$s - variable strain equal 4*$s - variable strain equal 4*0.16000000000000000333 - print ">>> step $i, total strain ${strain}" ->>> step 4, total strain 0.64000000000000001332 - change_box all y delta 0 $s remap units lattice - change_box all y delta 0 0.16000000000000000333 remap units lattice -Changing box ... - orthogonal box = (-40.8 -40.8 0) to (40.8 43.4112 12.24) - minimize 0.0 ${tol} 100000 1000000 - minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3358 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum - 773 0 -18693.66587952461 -90194.671 0.063702858 0.00034764707 3.1089714e-14 - 780 0 -18693.97673971806 -89108.484 0.031180803 -0.0072593906 -1.0696131e-13 - 790 0 -18694.10178196363 -88649.429 -0.45437346 0.6792836 -5.3984595e-15 - 800 0 -18694.13014771662 -88567.278 -0.15697662 -0.013106095 -7.2589504e-14 - 810 0 -18694.13402657088 -88559.997 0.02596227 0.044720917 -5.2988863e-14 - 820 0 -18694.13485964635 -88563.347 -0.011123094 -0.022007456 -9.397344e-14 - 830 0 -18694.13498855082 -88564.139 -0.0034872424 -0.0069926492 1.9340432e-14 - 840 0 -18694.13499960769 -88564.237 0.00071682697 -0.00052543471 -1.3546456e-14 - 850 0 -18694.13500022692 -88564.177 -0.00018710267 8.8516819e-05 -8.5794219e-14 - 860 0 -18694.13500035583 -88564.103 0.00030396893 -0.00024100413 -2.134265e-13 - 870 0 -18694.13500038065 -88564.126 0.00024126745 4.592756e-05 -5.439052e-13 - 880 0 -18694.13500038689 -88564.176 -1.5490579e-05 -6.8952995e-05 -6.6298703e-13 - 890 0 -18694.13500038718 -88564.19 -4.6769486e-06 2.1421428e-05 -2.0346971e-12 - 900 0 -18694.13500038748 -88564.203 -1.9113332e-06 -1.5885822e-07 -2.1443611e-12 - 910 0 -18694.13500038753 -88564.204 -1.809664e-07 -1.6506767e-06 -3.6864192e-12 - 920 0 -18694.13500038753 -88564.203 -3.6953839e-07 6.4809133e-07 -5.7557188e-12 - 930 0 -18694.13500038745 -88564.203 1.5219849e-07 3.1170517e-07 -2.1760104e-11 - 940 0 -18694.13500038737 -88564.203 -2.2003925e-07 -3.0377181e-08 -1.9391159e-11 - 950 0 -18694.13500038737 -88564.203 -2.1937908e-09 -6.6808879e-09 -6.9718068e-12 - 960 0 -18694.13500038756 -88564.203 5.6044285e-09 -1.8903536e-08 -4.7082997e-13 - 970 0 -18694.1350003873 -88564.203 1.7243584e-09 -3.0105237e-09 -8.1476492e-14 - 980 0 -18694.13500038745 -88564.203 1.4689015e-09 3.1015348e-10 2.3777855e-14 - 990 0 -18694.13500038741 -88564.203 -1.966375e-10 -2.0503779e-10 -3.0092248e-14 -1000 0 -18694.13500038748 -88564.203 1.3654005e-10 -3.1843256e-10 -6.6578687e-14 -1010 0 -18694.13500038744 -88564.203 -3.0276585e-11 1.1110089e-11 -1.2101604e-13 -1020 0 -18694.13500038753 -88564.203 -3.0206456e-11 -1.5138533e-11 -1.6674162e-14 -1030 0 -18694.13500038753 -88564.203 1.507389e-12 1.1376859e-11 -6.9095771e-14 -1032 0 -18694.13500038751 -88564.203 1.2597073e-12 1.0879965e-11 3.8890766e-14 -Loop time of 1.42236 on 4 procs for 259 steps with 4800 atoms - -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18693.6658795 -18694.1350004 -18694.1350004 - Force two-norm initial, final = 1.28204 9.41219e-12 - Force max component initial, final = 0.194164 4.11711e-13 - Final line search alpha, max atom move = 1 4.11711e-13 - Iterations, force evaluations = 259 518 - -Pair time (%) = 1.2017 (84.4863) -Neigh time (%) = 0 (0) -Comm time (%) = 0.163798 (11.5159) -Outpt time (%) = 0.00298786 (0.210063) -Other time (%) = 0.0538747 (3.78769) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36328.5 ave 36381 max 36265 min -Histogram: 1 0 0 1 0 0 0 0 1 1 -FullNghs: 72657 ave 72657 max 72657 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 290628 -Ave neighs/atom = 60.5475 -Neighbor list builds = 0 -Dangerous builds = 0 -# reset_timestep $i - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.6491 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -1032 0 -18694.13500038751 -88564.203 1.2597022e-12 1.0880291e-11 3.8668721e-14 -1033 0 -18694.13500038751 -88564.203 1.2597022e-12 1.0880291e-11 3.8668721e-14 -Loop time of 0.106807 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.00251204 (2.35195) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000287771 (0.269432) -Outpt time (%) = 0.00684601 (6.40972) -Other time (%) = 0.0971609 (90.9689) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36369 ave 36391 max 36349 min -Histogram: 1 1 0 0 0 0 0 1 0 1 -FullNghs: 72738 ave 72738 max 72738 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 290952 -Ave neighs/atom = 60.615 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.eshelby_static loop_i - variable strain equal $i*$s - variable strain equal 5*$s - variable strain equal 5*0.16000000000000000333 - print ">>> step $i, total strain ${strain}" ->>> step 5, total strain 0.80000000000000004441 - change_box all y delta 0 $s remap units lattice - change_box all y delta 0 0.16000000000000000333 remap units lattice -Changing box ... - orthogonal box = (-40.8 -40.8 0) to (40.8 44.064 12.24) - minimize 0.0 ${tol} 100000 1000000 - minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3358 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -1033 0 -18636.11013032917 -107306.84 0.087179197 0.0015874207 5.9226929e-14 -1040 0 -18636.43103673087 -106192.36 0.044337741 -0.0066832041 -2.711581e-13 -1050 0 -18636.57280297759 -105676.48 -0.48638084 0.8314865 -7.1536527e-14 -1060 0 -18636.60771660457 -105569.62 -0.16511159 -0.030767882 5.0612552e-13 -1070 0 -18636.61229428169 -105559.38 0.021430043 0.030969805 6.5606374e-14 -1080 0 -18636.6131951782 -105561.67 -0.0062332338 -0.016535145 -1.4061989e-12 -1090 0 -18636.61336187003 -105564.55 -0.0033479828 -0.0098903018 -2.3661307e-12 -1100 0 -18636.61337988257 -105565.01 0.00082221778 -0.0023605315 -7.5842631e-12 -1110 0 -18636.61338086593 -105565.22 -0.00041685633 0.00079578125 -1.8850539e-11 -1120 0 -18636.61338113123 -105565.3 0.0005607417 -0.00034040033 -1.6063452e-10 -1130 0 -18636.61338119124 -105565.4 0.00025131709 1.3912646e-05 -2.1913269e-10 -1140 0 -18636.61338120433 -105565.47 -1.6069476e-05 -8.4841428e-06 -1.807068e-09 -1150 0 -18636.61338120511 -105565.48 -2.0354865e-05 -9.6508247e-06 -1.6113042e-09 -1160 0 -18636.6133812051 -105565.49 -8.4560077e-06 6.3269038e-07 -1.6308327e-10 -1170 0 -18636.61338120514 -105565.49 -2.6432899e-07 -1.3205451e-06 -1.4417877e-11 -1180 0 -18636.61338120505 -105565.49 -5.2221108e-07 6.0279457e-07 -6.2287736e-12 -1190 0 -18636.61338120524 -105565.49 1.2160526e-07 1.4909178e-06 -3.4658057e-11 -1200 0 -18636.61338120506 -105565.49 -2.610876e-07 -1.0438531e-07 -5.191389e-12 -1210 0 -18636.61338120499 -105565.49 -2.7802297e-08 -3.8082618e-08 -6.6586493e-14 -1220 0 -18636.61338120526 -105565.49 1.7558125e-08 -1.2699266e-08 2.385505e-14 -1230 0 -18636.61338120508 -105565.49 3.2094906e-10 -2.7796004e-09 1.0958595e-13 -1240 0 -18636.61338120509 -105565.49 3.6676946e-09 -7.792043e-10 1.1116975e-13 -1250 0 -18636.61338120498 -105565.49 1.3566517e-09 9.0741524e-10 3.6538654e-13 -1260 0 -18636.61338120516 -105565.49 1.7336501e-10 -5.0765115e-10 -3.5913113e-14 -1270 0 -18636.61338120517 -105565.49 -4.7390856e-11 -8.8615663e-11 -3.1520793e-14 -1280 0 -18636.61338120521 -105565.49 -6.1333239e-11 6.4489745e-11 -7.3884475e-14 -1290 0 -18636.61338120518 -105565.49 -2.2122047e-11 -7.9136919e-12 -9.8118562e-14 -1300 0 -18636.61338120521 -105565.49 1.081791e-11 1.3057743e-11 1.0332013e-14 -1305 0 -18636.61338120521 -105565.49 5.0637371e-12 8.1071121e-12 -3.3531337e-14 -Loop time of 1.49288 on 4 procs for 272 steps with 4800 atoms - -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18636.1101303 -18636.6133812 -18636.6133812 - Force two-norm initial, final = 1.27885 8.7139e-12 - Force max component initial, final = 0.192559 3.94851e-13 - Final line search alpha, max atom move = 1 3.94851e-13 - Iterations, force evaluations = 272 544 - -Pair time (%) = 1.2585 (84.2998) -Neigh time (%) = 0 (0) -Comm time (%) = 0.178499 (11.9567) -Outpt time (%) = 0.00285649 (0.191341) -Other time (%) = 0.0530302 (3.5522) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36205.5 ave 36236 max 36183 min -Histogram: 1 1 0 0 0 1 0 0 0 1 -FullNghs: 72411 ave 72411 max 72411 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 289644 -Ave neighs/atom = 60.3425 -Neighbor list builds = 0 -Dangerous builds = 0 -# reset_timestep $i - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.6491 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -1305 0 -18636.61338120522 -105565.49 5.0642547e-12 8.1072881e-12 -3.333011e-14 -1306 0 -18636.61338120522 -105565.49 5.0642547e-12 8.1072881e-12 -3.333011e-14 -Loop time of 0.107637 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.00256181 (2.38003) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000280023 (0.260154) -Outpt time (%) = 0.00679702 (6.31473) -Other time (%) = 0.0979986 (91.0451) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36277.5 ave 36294 max 36263 min -Histogram: 1 0 1 0 0 1 0 0 0 1 -FullNghs: 72555 ave 72555 max 72555 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 290220 -Ave neighs/atom = 60.4625 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.eshelby_static loop_i - variable strain equal $i*$s - variable strain equal 6*$s - variable strain equal 6*0.16000000000000000333 - print ">>> step $i, total strain ${strain}" ->>> step 6, total strain 0.95999999999999996447 - change_box all y delta 0 $s remap units lattice - change_box all y delta 0 0.16000000000000000333 remap units lattice -Changing box ... - orthogonal box = (-40.8 -40.8 0) to (40.8 44.7168 12.24) - minimize 0.0 ${tol} 100000 1000000 - minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3358 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -1306 0 -18568.52876784999 -122625.13 0.11327516 0.0031492485 -6.8263971e-14 -1310 0 -18568.74882073336 -121901.81 0.095186133 -0.0011416444 -8.7660781e-14 -1320 0 -18569.00454251567 -120950.18 -0.2410968 0.95855071 2.5853018e-13 -1330 0 -18569.07349706784 -120727.11 -0.24319965 -0.2912924 2.5074474e-13 -1340 0 -18569.08574491055 -120691.34 -0.012980899 0.14967506 -3.1190935e-13 -1350 0 -18569.08742093104 -120692.66 0.020268874 -0.022779739 -7.7562089e-14 -1360 0 -18569.08784344275 -120694.96 -0.017030722 -0.011207164 -1.9529864e-13 -1370 0 -18569.08790197284 -120695.45 -0.00055562662 -0.0042723235 -1.835242e-13 -1380 0 -18569.08790491389 -120695.76 -0.0010121555 0.00048878622 -5.4929325e-13 -1390 0 -18569.0879053711 -120695.97 0.00033781243 -0.00022074882 -1.9400809e-12 -1400 0 -18569.08790544242 -120696.04 0.00023923846 -0.00026303293 -7.7404767e-12 -1410 0 -18569.08790546677 -120696.15 0.00020998502 0.0001546831 -1.9456521e-11 -1420 0 -18569.08790547033 -120696.18 -1.9687675e-06 -1.5683061e-05 -2.6463075e-11 -1430 0 -18569.08790547062 -120696.19 -6.2370159e-06 1.6065939e-06 -5.4179854e-11 -1440 0 -18569.08790547075 -120696.2 -4.190645e-06 -4.6222325e-07 -6.4106238e-12 -1450 0 -18569.08790547073 -120696.2 5.0919634e-07 -1.0856681e-06 -8.6963423e-14 -1460 0 -18569.08790547067 -120696.2 -2.9904815e-07 9.091392e-08 6.2362268e-13 -1470 0 -18569.08790547063 -120696.2 2.0150636e-08 6.7285708e-07 2.618978e-12 -1480 0 -18569.08790547054 -120696.2 -3.083908e-07 -6.9259129e-08 3.8106879e-12 -1490 0 -18569.08790547073 -120696.2 2.6034682e-09 -1.2826672e-08 3.4164425e-13 -1500 0 -18569.08790547059 -120696.2 6.7729363e-10 -4.2930907e-09 9.8204431e-14 -1510 0 -18569.08790547062 -120696.2 -9.5846333e-10 -1.9455995e-09 4.7516678e-14 -1520 0 -18569.08790547062 -120696.2 1.5667016e-09 -6.459461e-11 -1.4132272e-13 -1530 0 -18569.08790547058 -120696.2 1.0396352e-09 1.4696064e-10 -3.2439329e-14 -1540 0 -18569.08790547059 -120696.2 -1.3541683e-12 -4.5800821e-10 3.0200668e-14 -1550 0 -18569.0879054705 -120696.2 -3.8374448e-11 -1.6138199e-11 -4.7493259e-14 -1560 0 -18569.08790547055 -120696.2 -3.19902e-11 9.1507895e-12 1.8244087e-14 -1570 0 -18569.08790547052 -120696.2 -1.7156297e-11 4.6740893e-12 3.5214887e-16 -1575 0 -18569.08790547054 -120696.2 -5.0504343e-12 -3.9081775e-13 6.7177167e-14 -Loop time of 1.43415 on 4 procs for 269 steps with 4800 atoms - -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18568.5287678 -18569.0879055 -18569.0879055 - Force two-norm initial, final = 1.27524 9.29525e-12 - Force max component initial, final = 0.191046 5.2689e-13 - Final line search alpha, max atom move = 1 5.2689e-13 - Iterations, force evaluations = 269 538 - -Pair time (%) = 1.23067 (85.8117) -Neigh time (%) = 0 (0) -Comm time (%) = 0.152007 (10.599) -Outpt time (%) = 0.00275606 (0.192173) -Other time (%) = 0.04872 (3.39712) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36160.5 ave 36177 max 36150 min -Histogram: 1 1 0 0 1 0 0 0 0 1 -FullNghs: 72321 ave 72321 max 72321 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 289284 -Ave neighs/atom = 60.2675 -Neighbor list builds = 0 -Dangerous builds = 0 -# reset_timestep $i - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.6491 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -1575 0 -18569.08790547054 -120696.2 -5.0503339e-12 -3.9139805e-13 6.7683706e-14 -1576 0 -18569.08790547054 -120696.2 -5.0503339e-12 -3.9139805e-13 6.7683706e-14 -Loop time of 0.1097 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.00253296 (2.309) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000263989 (0.240647) -Outpt time (%) = 0.0067783 (6.17896) -Other time (%) = 0.100124 (91.2714) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36175.5 ave 36206 max 36147 min -Histogram: 1 0 1 0 0 0 1 0 0 1 -FullNghs: 72351 ave 72351 max 72351 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 289404 -Ave neighs/atom = 60.2925 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.eshelby_static loop_i - variable strain equal $i*$s - variable strain equal 7*$s - variable strain equal 7*0.16000000000000000333 - print ">>> step $i, total strain ${strain}" ->>> step 7, total strain 1.1200000000000001066 - change_box all y delta 0 $s remap units lattice - change_box all y delta 0 0.16000000000000000333 remap units lattice -Changing box ... - orthogonal box = (-40.8 -40.8 0) to (40.8 45.3696 12.24) - minimize 0.0 ${tol} 100000 1000000 - minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3358 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -1576 0 -18491.90169921529 -136205.45 0.14307644 0.0051325969 1.0172852e-13 -1580 0 -18492.1310576982 -135456.73 0.12095202 0.0011746767 1.4052995e-13 -1590 0 -18492.43123925865 -134349.55 -0.24024543 0.9903784 -1.7584198e-13 -1600 0 -18492.52677637159 -134029.75 -0.27750893 -0.14147964 -8.1081843e-14 -1610 0 -18492.54487664072 -133963.95 -0.026440274 0.078470791 1.7319913e-13 -1620 0 -18492.54726511076 -133959.78 0.033197488 -0.011966987 1.1562539e-13 -1630 0 -18492.54782232645 -133962.99 -0.022229907 -0.0082739991 1.1270845e-13 -1640 0 -18492.54790581508 -133964.99 0.0004273738 -0.0098225601 1.9093147e-13 -1650 0 -18492.54791271241 -133965.77 -0.00039139543 0.0001276143 8.4582688e-13 -1660 0 -18492.5479137973 -133966.51 0.00060980725 -0.0001052093 1.9350329e-12 -1670 0 -18492.54791403718 -133966.85 0.00023817137 -0.00052460153 2.0599427e-11 -1680 0 -18492.54791412406 -133967.17 0.00012036401 0.00016590705 3.1029334e-11 -1690 0 -18492.54791413136 -133967.22 4.3077888e-05 3.7995289e-05 2.1927101e-10 -1700 0 -18492.54791413183 -133967.22 -2.1812294e-05 -2.2334739e-06 5.7539537e-11 -1710 0 -18492.54791413153 -133967.22 -6.6937911e-07 2.7960399e-06 1.9197604e-12 -1720 0 -18492.5479141317 -133967.22 2.699247e-06 2.5072053e-07 2.4410942e-13 -1730 0 -18492.54791413172 -133967.22 5.4986594e-07 -2.6582947e-07 -8.9572447e-15 -1740 0 -18492.54791413186 -133967.22 -3.0716408e-07 1.3843207e-06 4.2735693e-13 -1750 0 -18492.54791413182 -133967.22 -2.7601617e-07 -9.7796011e-09 2.7825147e-12 -1760 0 -18492.54791413178 -133967.22 -7.9591846e-08 -1.0148109e-07 8.6370928e-13 -1770 0 -18492.54791413184 -133967.22 1.8878696e-08 -9.8577802e-09 3.5801223e-14 -1780 0 -18492.54791413205 -133967.22 -6.1481142e-09 -4.2156327e-09 2.3894775e-13 -1790 0 -18492.54791413176 -133967.22 -6.7764872e-10 2.9868985e-10 3.3884354e-14 -1800 0 -18492.54791413182 -133967.22 1.4509676e-09 1.2334929e-09 -5.65702e-14 -1810 0 -18492.5479141318 -133967.22 8.4658451e-10 -1.3259555e-10 -2.8058285e-14 -1820 0 -18492.5479141317 -133967.22 -1.0651127e-10 -8.8667524e-11 6.1565336e-15 -1830 0 -18492.54791413185 -133967.22 -4.1737809e-11 8.9127831e-11 -1.167573e-13 -1840 0 -18492.54791413181 -133967.22 -5.2870488e-11 1.9493503e-11 -4.1844132e-14 -1850 0 -18492.54791413184 -133967.22 -5.6782406e-12 1.2649759e-13 -1.0939426e-13 -1860 0 -18492.54791413187 -133967.22 -1.9471408e-12 3.263459e-12 1.1285244e-14 -1867 0 -18492.54791413186 -133967.22 6.9845188e-13 6.5521008e-12 -1.1701317e-13 -Loop time of 1.57683 on 4 procs for 291 steps with 4800 atoms - -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18491.9016992 -18492.5479141 -18492.5479141 - Force two-norm initial, final = 1.27584 9.73889e-12 - Force max component initial, final = 0.189643 4.5029e-13 - Final line search alpha, max atom move = 1 4.5029e-13 - Iterations, force evaluations = 291 582 - -Pair time (%) = 1.34179 (85.0939) -Neigh time (%) = 0 (0) -Comm time (%) = 0.178335 (11.3097) -Outpt time (%) = 0.00331348 (0.210136) -Other time (%) = 0.053396 (3.38629) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36079.5 ave 36110 max 36044 min -Histogram: 1 0 0 1 0 0 0 0 1 1 -FullNghs: 72159 ave 72159 max 72159 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 288636 -Ave neighs/atom = 60.1325 -Neighbor list builds = 0 -Dangerous builds = 0 -# reset_timestep $i - run 1 -Setting up run ... - ATC: computing bond matrix ...........done -Memory usage per processor = 23.6491 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -1867 0 -18492.54791413186 -133967.22 6.9777732e-13 6.551863e-12 -1.1686745e-13 -1868 0 -18492.54791413186 -133967.22 6.9777732e-13 6.551863e-12 -1.1686745e-13 -Loop time of 0.110071 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.00254023 (2.30781) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000335038 (0.304383) -Outpt time (%) = 0.00693858 (6.30372) -Other time (%) = 0.100257 (91.0841) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2856 ave 2856 max 2856 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 36094.5 ave 36117 max 36051 min -Histogram: 1 0 0 0 0 0 1 0 0 2 -FullNghs: 72189 ave 72189 max 72189 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 288756 -Ave neighs/atom = 60.1575 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.eshelby_static loop_i - variable strain equal $i*$s - variable strain equal 8*$s - variable strain equal 8*0.16000000000000000333 - print ">>> step $i, total strain ${strain}" ->>> step 8, total strain 1.2800000000000000266 - change_box all y delta 0 $s remap units lattice - change_box all y delta 0 0.16000000000000000333 remap units lattice -Changing box ... - orthogonal box = (-40.8 -40.8 0) to (40.8 46.0224 12.24) - minimize 0.0 ${tol} 100000 1000000 - minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ...........done -Memory usage per processor = 24.3358 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -1868 0 -18407.23836455257 -148059.35 0.17824806 0.0077631243 -1.6145679e-13 -1870 0 -18407.35825930425 -147753.08 0.17162524 0.0068226839 5.1991397e-14 -1880 0 -18407.83559382475 -145851.12 -0.021096249 -0.13180348 2.8685387e-13 -1890 0 -18408.2015011047 -144020.77 -0.64909152 1.2116413 1.6853186e-13 -1900 0 -18408.59292951682 -141218.96 -0.08302438 -0.47582143 -1.4403756e-13 -1910 0 -18409.4765396664 -134179.79 0.81588279 0.52187663 -1.4081618e-14 -1920 0 -18413.66102681115 -125476.69 -0.75246577 0.63898014 2.3906745e-13 -1930 0 -18416.45369771184 -120852.21 0.62028044 -0.10465531 9.6651246e-13 -1940 0 -18421.53975460122 -112486.78 -0.65003602 1.5468217 9.6126319e-13 -1950 0 -18427.38266756838 -104240.11 -0.84329602 1.5646833 1.841461e-12 -1960 0 -18435.07175167299 -93444.303 -0.37984669 2.2664338 3.4765593e-14 -1970 0 -18441.73057718596 -83874.061 0.058480218 1.3986995 1.3299761e-12 -1980 0 -18449.28291594671 -71174.024 0.063935535 1.163249 -1.3587948e-13 -1990 0 -18456.10248218176 -63369.916 1.0177229 0.74671187 -1.6969395e-12 -2000 0 -18464.9998740891 -54232.856 0.75646448 -0.26067276 -6.1633641e-12 -2010 0 -18480.88491289675 -45481.647 0.78433604 2.2535262 1.5989705e-12 -2020 0 -18500.1431770592 -40030.074 1.0452221 0.88528823 1.7144593e-12 -2030 0 -18521.50155145743 -30200.138 2.2932883 2.6095268 4.6325582e-12 -2040 0 -18537.85209559528 -16777.734 3.3443628 0.21170446 -1.5426219e-12 -2050 0 -18542.89363908397 -9535.43 0.21119377 -0.23199164 -2.3318361e-12 -2060 0 -18544.16187127086 -5630.8493 0.27761823 0.17400597 1.1770047e-12 -2070 0 -18544.47853257111 -3453.3272 0.0052400191 0.56277282 -5.3569822e-13 -2080 0 -18544.55460189864 -2361.9773 -0.034319823 0.11396983 8.0015682e-13 -2090 0 -18544.57775090135 -1652.5596 0.063904673 0.020843455 6.1015602e-13 -2100 0 -18544.58333280036 -1325.0949 0.0088898695 0.05436218 -3.1974944e-13 -2110 0 -18544.58449704061 -1189.9357 -0.0081196536 0.023093202 1.3144347e-13 -2120 0 -18544.58489130795 -1090.6528 -0.013334939 -0.00083308441 7.5689455e-14 -2130 0 -18544.58499173266 -1051.4974 -0.007217772 0.0061402811 -3.8091058e-14 -2140 0 -18544.58501317528 -1033.4783 0.00055171322 0.0007881195 -4.2004594e-14 -2150 0 -18544.58501921195 -1024.1479 0.00064646979 0.0012980319 3.2533004e-14 -2160 0 -18544.58502058311 -1019.8368 -0.00090273924 0.00044863611 -1.0888686e-13 -2170 0 -18544.58502098134 -1017.7954 -0.00056580161 0.0005662624 -6.8519843e-14 -2180 0 -18544.58502106684 -1016.9371 -0.00015623361 3.9990029e-05 1.5700288e-13 -2190 0 -18544.58502108469 -1016.4696 -2.0813878e-05 8.8730455e-05 1.7381756e-13 -2200 0 -18544.5850210904 -1016.2354 8.6129055e-06 -1.7118006e-05 -4.039824e-14 -2210 0 -18544.58502109143 -1016.1477 -4.8479759e-06 8.8410543e-06 4.5199955e-14 -2220 0 -18544.58502109175 -1016.0882 -1.5290276e-05 1.2769498e-05 1.7888468e-14 -2230 0 -18544.58502109184 -1016.0561 -3.3543653e-06 5.4823802e-06 8.233865e-14 -2240 0 -18544.58502109185 -1016.0425 -3.2853651e-07 1.3036026e-06 1.2482376e-13 -2250 0 -18544.58502109189 -1016.0335 4.7657222e-07 6.1102889e-07 -7.725591e-14 -2260 0 -18544.58502109182 -1016.0292 -2.5962662e-07 2.1173209e-07 -3.1006447e-14 -2270 0 -18544.58502109182 -1016.0269 -2.5168543e-07 2.1347313e-07 -2.4950528e-14 -2280 0 -18544.58502109193 -1016.0257 6.8141159e-08 3.3618215e-08 5.1035565e-14 -2290 0 -18544.58502109191 -1016.0252 1.8988043e-08 6.7251267e-08 -1.104429e-13 -2300 0 -18544.58502109201 -1016.0248 6.4237605e-08 1.3866362e-10 -1.1696547e-13 -2310 0 -18544.58502109178 -1016.0247 1.3031489e-08 5.416356e-09 -9.1763402e-14 -2320 0 -18544.58502109178 -1016.0246 -2.0349924e-10 1.2570585e-08 -1.196352e-13 -2330 0 -18544.58502109163 -1016.0246 5.7314652e-10 -1.9545557e-09 -1.7981623e-13 -2340 0 -18544.58502109184 -1016.0246 2.8219654e-09 4.0619579e-10 -2.5039346e-13 -2350 0 -18544.58502109179 -1016.0246 1.2039679e-09 3.8910008e-10 1.2338047e-13 -2360 0 -18544.58502109167 -1016.0246 4.8857533e-10 8.2124555e-12 -1.3082417e-13 -2370 0 -18544.58502109163 -1016.0246 5.7344183e-11 1.4028061e-11 -7.1036926e-15 -2380 0 -18544.58502109162 -1016.0246 6.9331788e-11 1.5899597e-10 1.4037903e-13 -2390 0 -18544.58502109099 -1016.0246 1.7919444e-11 3.2794189e-12 1.1836018e-13 -2400 0 -18544.58502109086 -1016.0246 4.7017882e-11 2.5658087e-12 -1.9249706e-13 -2410 0 -18544.58502109079 -1016.0246 9.0523535e-12 -5.1709692e-12 -8.4116741e-14 -2420 0 -18544.58502109054 -1016.0246 2.8651381e-12 8.1466436e-12 1.5645645e-13 -2430 0 -18544.58502109047 -1016.0246 9.2212618e-13 -1.7898741e-13 9.6594607e-14 -2432 0 -18544.58502109047 -1016.0246 -2.5384753e-13 1.381581e-12 7.1834899e-15 -Loop time of 3.30796 on 4 procs for 564 steps with 4800 atoms - -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18407.2383646 -18544.5850211 -18544.5850211 - Force two-norm initial, final = 1.27905 9.63484e-12 - Force max component initial, final = 0.188373 4.51583e-13 - Final line search alpha, max atom move = 1 4.51583e-13 - Iterations, force evaluations = 564 1082 - -Pair time (%) = 2.50328 (75.6744) -Neigh time (%) = 0.250084 (7.56007) -Comm time (%) = 0.351172 (10.616) -Outpt time (%) = 0.00615633 (0.186107) -Other time (%) = 0.197269 (5.96346) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2700 ave 2700 max 2700 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 38596.5 ave 38637 max 38540 min -Histogram: 1 0 0 0 0 0 1 1 0 1 -FullNghs: 77193 ave 77193 max 77193 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 308772 -Ave neighs/atom = 64.3275 -Neighbor list builds = 19 -Dangerous builds = 0 -# reset_timestep $i - run 1 -Setting up run ... - ATC: computing bond matrix ..........done -Memory usage per processor = 23.6491 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -2432 0 -18544.58502109047 -1016.0246 -2.5329791e-13 1.381277e-12 7.3534928e-15 -2433 0 -18544.58502109047 -1016.0246 -2.5329791e-13 1.381277e-12 7.3534928e-15 -Loop time of 0.126103 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.00260401 (2.06499) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000249207 (0.197622) -Outpt time (%) = 0.00627953 (4.97968) -Other time (%) = 0.11697 (92.7577) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2700 ave 2700 max 2700 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 44940 ave 45026 max 44838 min -Histogram: 1 0 1 0 0 0 0 0 0 2 -FullNghs: 89880 ave 89880 max 89880 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 359520 -Ave neighs/atom = 74.9 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.eshelby_static loop_i - variable strain equal $i*$s - variable strain equal 9*$s - variable strain equal 9*0.16000000000000000333 - print ">>> step $i, total strain ${strain}" ->>> step 9, total strain 1.4399999999999999467 - change_box all y delta 0 $s remap units lattice - change_box all y delta 0 0.16000000000000000333 remap units lattice -Changing box ... - orthogonal box = (-40.8 -40.8 0) to (40.8 46.6752 12.24) - minimize 0.0 ${tol} 100000 1000000 - minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ..........done -Memory usage per processor = 24.3365 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -2433 0 -18537.76901415941 -24298.948 3.8747523e-13 5.2831402e-12 -6.6347969e-14 -2440 0 -18540.01318499379 -16519.475 -3.2208582e-12 -2.7180729e-05 -4.0105939e-13 -2450 0 -18543.0953686088 -5752.9757 8.4202206e-12 7.0443093 7.1120193e-14 -2460 0 -18544.58421511342 -984.24581 4.48884e-13 0.11138675 -7.4289533e-14 -2470 0 -18544.58494424724 -937.76995 -1.4907155e-12 -0.029415925 -1.4615392e-13 -2480 0 -18544.58501777505 -1005.2306 -2.5313443e-12 -0.0028072577 4.4010802e-13 -2490 0 -18544.58502108903 -1008.4303 -1.2945912e-12 0.00023653818 1.8944256e-12 -2500 0 -18544.58502109101 -1008.5152 3.1169104e-13 1.8192203e-05 -3.9932814e-13 -2510 0 -18544.58502109143 -1008.4451 -1.4675192e-12 -2.074999e-06 -1.7850652e-13 -2520 0 -18544.58502109134 -1008.4422 3.9145238e-13 -1.3068582e-07 6.0760945e-13 -2530 0 -18544.58502109258 -1008.4422 6.2648817e-12 -5.3016e-10 4.406718e-14 -2540 0 -18544.58502109214 -1008.4423 -1.8432447e-11 2.1091244e-09 2.1755358e-12 -2550 0 -18544.58502109095 -1008.4423 -1.588503e-13 3.5010943e-11 1.1601831e-14 -2560 0 -18544.58502109056 -1008.4423 1.7819469e-13 1.3868038e-11 6.517703e-14 -2570 0 -18544.58502109044 -1008.4423 1.4870776e-12 -1.2270293e-11 9.0609811e-14 -2575 0 -18544.58502109047 -1008.4423 -2.3857825e-13 1.0195675e-11 6.0073474e-15 -Loop time of 0.76043 on 4 procs for 142 steps with 4800 atoms - -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18537.7690142 -18544.5850211 -18544.5850211 - Force two-norm initial, final = 2.90351 8.35114e-12 - Force max component initial, final = 0.18742 4.36984e-13 - Final line search alpha, max atom move = 1 4.36984e-13 - Iterations, force evaluations = 142 284 - -Pair time (%) = 0.658718 (86.6244) -Neigh time (%) = 0 (0) -Comm time (%) = 0.0750958 (9.87544) -Outpt time (%) = 0.00137353 (0.180625) -Other time (%) = 0.0252423 (3.31948) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2700 ave 2700 max 2700 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 40500 ave 40568 max 40427 min -Histogram: 1 1 0 0 0 0 0 0 0 2 -FullNghs: 81000 ave 81000 max 81000 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 324000 -Ave neighs/atom = 67.5 -Neighbor list builds = 0 -Dangerous builds = 0 -# reset_timestep $i - run 1 -Setting up run ... - ATC: computing bond matrix ..........done -Memory usage per processor = 23.6498 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -2575 0 -18544.58502109042 -1008.4423 -2.3877189e-13 1.0195595e-11 6.0385724e-15 -2576 0 -18544.58502109042 -1008.4423 -2.3877189e-13 1.0195595e-11 6.0385724e-15 -Loop time of 0.127931 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.00263089 (2.0565) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000318468 (0.248938) -Outpt time (%) = 0.00622201 (4.86358) -Other time (%) = 0.118759 (92.831) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2700 ave 2700 max 2700 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 44940 ave 45033 max 44832 min -Histogram: 1 1 0 0 0 0 0 0 0 2 -FullNghs: 89880 ave 89880 max 89880 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 359520 -Ave neighs/atom = 74.9 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.eshelby_static loop_i - variable strain equal $i*$s - variable strain equal 10*$s - variable strain equal 10*0.16000000000000000333 - print ">>> step $i, total strain ${strain}" ->>> step 10, total strain 1.6000000000000000888 - change_box all y delta 0 $s remap units lattice - change_box all y delta 0 0.16000000000000000333 remap units lattice -Changing box ... - orthogonal box = (-40.8 -40.8 0) to (40.8 47.328 12.24) - minimize 0.0 ${tol} 100000 1000000 - minimize 0.0 9.999999999999999395e-12 100000 1000000 -WARNING: Resetting reneighboring criteria during minimization (../min.cpp:173) -Setting up minimization ... - ATC: computing bond matrix ..........done -Memory usage per processor = 24.3365 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -2576 0 -18537.86919514 -23952.428 -6.3755067e-13 1.8610839e-11 -6.2221062e-14 -2580 0 -18539.14079053524 -19773.613 -6.9875621e-12 -2.1231065e-12 -7.5061485e-15 -2590 0 -18542.20234735839 -8563.5634 3.3833963e-12 5.0447263 -9.290832e-14 -2600 0 -18544.58003335739 -936.09475 -3.8256923e-12 0.15421118 -2.7653921e-13 -2610 0 -18544.58488125377 -936.26337 -4.1992287e-13 -0.061485489 -9.5439281e-14 -2620 0 -18544.58498734563 -969.47152 -2.7277214e-11 -0.0023912698 -1.5980862e-12 -2630 0 -18544.5850210808 -1000.7463 3.2661308e-13 0.0004509302 -9.8292902e-14 -2640 0 -18544.58502109149 -1001.032 -7.2744767e-13 -1.2247845e-05 -1.2311333e-14 -2650 0 -18544.58502109259 -1000.9825 2.2260383e-12 1.1703007e-05 6.7454722e-13 -2660 0 -18544.58502109259 -1000.9724 -5.3904045e-12 9.5787661e-08 1.8519162e-12 -2670 0 -18544.58502109156 -1000.9723 -1.0012351e-12 -1.132507e-08 -4.9276555e-14 -2680 0 -18544.58502109152 -1000.9723 -4.3052271e-13 9.7475523e-09 -5.7240497e-13 -2690 0 -18544.58502109055 -1000.9724 3.8952735e-14 2.8103179e-10 1.3394841e-12 -2700 0 -18544.58502109041 -1000.9724 3.6211563e-13 6.3288004e-12 3.3577308e-14 -Loop time of 0.653263 on 4 procs for 124 steps with 4800 atoms - -Minimization stats: - Stopping criterion = force tolerance - Energy initial, next-to-last, final = - -18537.8691951 -18544.5850211 -18544.5850211 - Force two-norm initial, final = 2.8826 9.42071e-12 - Force max component initial, final = 0.18607 4.28359e-13 - Final line search alpha, max atom move = 1 4.28359e-13 - Iterations, force evaluations = 124 248 - -Pair time (%) = 0.571445 (87.4755) -Neigh time (%) = 0 (0) -Comm time (%) = 0.05767 (8.82799) -Outpt time (%) = 0.0013926 (0.213176) -Other time (%) = 0.0227555 (3.48336) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2700 ave 2700 max 2700 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 40500 ave 40577 max 40425 min -Histogram: 2 0 0 0 0 0 0 0 0 2 -FullNghs: 81000 ave 81000 max 81000 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 324000 -Ave neighs/atom = 67.5 -Neighbor list builds = 0 -Dangerous builds = 0 -# reset_timestep $i - run 1 -Setting up run ... - ATC: computing bond matrix ..........done -Memory usage per processor = 23.6498 Mbytes -Step KinEng PotEng Press fxsum fysum fzsum -2700 0 -18544.5850210904 -1000.9724 3.6220691e-13 6.3290068e-12 3.3001379e-14 -2701 0 -18544.5850210904 -1000.9724 3.6220691e-13 6.3290068e-12 3.3001379e-14 -Loop time of 0.127289 on 4 procs for 1 steps with 4800 atoms - -Pair time (%) = 0.00261998 (2.05829) -Neigh time (%) = 0 (0) -Comm time (%) = 0.000262022 (0.205848) -Outpt time (%) = 0.0061515 (4.83269) -Other time (%) = 0.118256 (92.9032) - -Nlocal: 1200 ave 1200 max 1200 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Nghost: 2700 ave 2700 max 2700 min -Histogram: 4 0 0 0 0 0 0 0 0 0 -Neighs: 44940 ave 45075 max 44784 min -Histogram: 1 0 1 0 0 0 0 0 1 1 -FullNghs: 89880 ave 89880 max 89880 min -Histogram: 4 0 0 0 0 0 0 0 0 0 - -Total # of neighbors = 359520 -Ave neighs/atom = 74.9 -Neighbor list builds = 0 -Dangerous builds = 0 -next i -jump in.eshelby_static loop_i +while attempting to start process rank 0. +-------------------------------------------------------------------------- +4 total processes failed to start diff --git a/examples/USER/atc/hardy/nvt.screen b/examples/USER/atc/hardy/nvt.screen index 4c460cb731..45ec10d3d3 100644 --- a/examples/USER/atc/hardy/nvt.screen +++ b/examples/USER/atc/hardy/nvt.screen @@ -1,92 +1,11 @@ -LAMMPS (30 Aug 2013) -dimension 3 -boundary p p p -lattice fcc 5.376 orient x 1 0 0 orient y 0 1 0 orient z 0 0 1 -Lattice spacing in x,y,z = 5.376 5.376 5.376 -region box block 0 5 0 5 0 5 -read_data nvt.init -Reading data file ... - orthogonal box = (0 0 0) to (26.88 26.88 26.88) - 1 by 2 by 2 MPI processor grid - 500 atoms - 500 velocities -pair_style lj/cut 13.0 -pair_coeff 1 1 0.2381 3.405 -group internal region box -500 atoms in group internal +No protocol specified +-------------------------------------------------------------------------- +mpirun was unable to launch the specified application as it could not access +or execute an executable: -fix ATC internal atc field -ATC: constructing shape function field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 3 -fix_modify ATC mesh create 1 1 1 box p p p - ATC: created uniform mesh with 8 nodes, 1 unique nodes, and 1 elements -fix_modify ATC atom_element_map eulerian 100 -fix_modify ATC fields none -fix_modify ATC fields add mass_density energy stress temperature kinetic_temperature -fix_modify ATC fields add velocity thermal_energy kinetic_energy -fix_modify ATC output nvtFE 100 text - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: +Executable: ../../../lmp_openmpi +Node: mithrandir -fix PP internal atc field -ATC: constructing shape function field estimate - ATC: version 2.0 - ATC: peratom PE compute created with ID: 3 -fix_modify PP filter type step # defaults to running -fix_modify PP filter on -fix_modify PP mesh create 1 1 1 box p p p - ATC: created uniform mesh with 8 nodes, 1 unique nodes, and 1 elements -fix_modify PP atom_element_map eulerian 100 -fix_modify PP fields add mass_density energy stress temperature kinetic_temperature -fix_modify PP fields add velocity thermal_energy kinetic_energy -fix_modify PP output nvtPP 100 text - ATC: Warning : text output can create _LARGE_ files - ATC: output custom names: - -thermo 100 -compute_modify thermo_temp extra 0 -thermo_style custom step temp etotal ke pe press vol -timestep 4.0 -reset_timestep 0 -# NOTE fixes performing time integration (init_integrate/final_integrate) should be defined after atc -fix NVT all nvt temp 30 30 10.0 drag 0.2 tchain 1 -log nvt.log -run 1000 -Setting up run ... - ATC: computing bond matrix ...........done - ATC: computing bond matrix ...........done -Memory usage per processor = 40.9608 Mbytes -Step Temp TotEng KinEng PotEng Press Volume - 0 31.104176 -898.55796 46.35782 -944.91578 -584.20571 19421.725 - 100 29.954062 -903.43223 44.643685 -948.07591 -646.45662 19421.725 - 200 29.952147 -900.39726 44.640831 -945.03809 -583.44492 19421.725 - 300 29.91148 -902.38105 44.58022 -946.96127 -626.6874 19421.725 - 400 29.936718 -900.07678 44.617835 -944.69461 -580.74144 19421.725 - 500 29.952289 -899.58418 44.641042 -944.22522 -570.0108 19421.725 - 600 29.980195 -901.64307 44.682633 -946.3257 -614.13849 19421.725 - 700 29.88447 -901.31686 44.539965 -945.85683 -604.74508 19421.725 - 800 29.876839 -900.32866 44.528592 -944.85725 -587.67852 19421.725 - 900 29.966977 -899.86769 44.662933 -944.53062 -581.80498 19421.725 - 1000 29.907621 -901.57887 44.574469 -946.15334 -613.00908 19421.725 -Loop time of 1.44902 on 4 procs for 1000 steps with 500 atoms - -Pair time (%) = 0.747129 (51.5609) -Neigh time (%) = 0 (0) -Comm time (%) = 0.295985 (20.4265) -Outpt time (%) = 0.00255066 (0.176027) -Other time (%) = 0.403357 (27.8365) - -Nlocal: 125 ave 129 max 121 min -Histogram: 1 0 0 0 0 2 0 0 0 1 -Nghost: 2563 ave 2567 max 2559 min -Histogram: 1 0 0 0 0 2 0 0 0 1 -Neighs: 22787.2 ave 23476 max 22083 min -Histogram: 1 0 0 0 0 2 0 0 0 1 -FullNghs: 45574.5 ave 47047 max 44066 min -Histogram: 1 0 0 0 0 2 0 0 0 1 - -Total # of neighbors = 182298 -Ave neighs/atom = 364.596 -Neighbor list builds = 0 -Dangerous builds = 0 +while attempting to start process rank 0. +-------------------------------------------------------------------------- +4 total processes failed to start -- GitLab