From dd76ac5010aeb43900f3dd9db9a4a75acf091f59 Mon Sep 17 00:00:00 2001
From: Richard Berger <richard.berger@temple.edu>
Date: Sun, 5 Mar 2017 20:40:45 -0500
Subject: [PATCH] Fix typos in tools folder
---
tools/i-pi/ipi/engine/thermostats.py | 2 +-
.../src/moltemplate_force_fields/amber/amberparm2lt.sh | 2 +-
tools/moltemplate/src/moltemplate_force_fields/gaff.lt | 2 +-
tools/moltemplate/src/ttree.py | 2 +-
tools/msi2lmp/frc_files/pcff.frc | 2 +-
5 files changed, 5 insertions(+), 5 deletions(-)
diff --git a/tools/i-pi/ipi/engine/thermostats.py b/tools/i-pi/ipi/engine/thermostats.py
index 5375bb917e..1fb048ec27 100644
--- a/tools/i-pi/ipi/engine/thermostats.py
+++ b/tools/i-pi/ipi/engine/thermostats.py
@@ -691,7 +691,7 @@ class ThermoNMGLE(Thermostat):
"""
def get_C(self):
- """Calculates C from temp (if C is not set explicitely)."""
+ """Calculates C from temp (if C is not set explicitly)."""
rv = np.ndarray((self.nb, self.ns+1, self.ns+1), float)
for b in range(0,self.nb):
diff --git a/tools/moltemplate/src/moltemplate_force_fields/amber/amberparm2lt.sh b/tools/moltemplate/src/moltemplate_force_fields/amber/amberparm2lt.sh
index 7ef489d5f0..92e7e2c42a 100755
--- a/tools/moltemplate/src/moltemplate_force_fields/amber/amberparm2lt.sh
+++ b/tools/moltemplate/src/moltemplate_force_fields/amber/amberparm2lt.sh
@@ -159,7 +159,7 @@ echo " # ----------------------------------------------------------------------
#echo " # This file was automatically generated by \"common/amber/amberparm2lt.sh\""
echo " # The basic atom nomenclature and conventions are explained here:"
echo " # http://ambermd.org/antechamber/gaff.pdf"
-echo " # For reference, the original gaff.dat file and format documenation are here:"
+echo " # For reference, the original gaff.dat file and format documentation are here:"
echo " # http://ambermd.org/AmberTools-get.html"
echo " # http://ambermd.org/formats.html#parm.dat"
echo " # ----------------------------------------------------------------------"
diff --git a/tools/moltemplate/src/moltemplate_force_fields/gaff.lt b/tools/moltemplate/src/moltemplate_force_fields/gaff.lt
index 82063a721b..683dbf4ee4 100644
--- a/tools/moltemplate/src/moltemplate_force_fields/gaff.lt
+++ b/tools/moltemplate/src/moltemplate_force_fields/gaff.lt
@@ -44,7 +44,7 @@ GAFF {
# ----------------------------------------------------------------------
# The basic atom nomenclature and conventions are explained here:
# http://ambermd.org/antechamber/gaff.pdf
- # For reference, the original gaff.dat file and format documenation are here:
+ # For reference, the original gaff.dat file and format documentation are here:
# http://ambermd.org/AmberTools-get.html
# http://ambermd.org/formats.html#parm.dat
# ----------------------------------------------------------------------
diff --git a/tools/moltemplate/src/ttree.py b/tools/moltemplate/src/ttree.py
index 87c385f27b..cddc9b8ac6 100644
--- a/tools/moltemplate/src/ttree.py
+++ b/tools/moltemplate/src/ttree.py
@@ -5177,7 +5177,7 @@ def BasicUI(settings,
# Parsing, and compiling is a multi-pass process.
- # Step 1: Read in the StaticObj (class) defintions, without checking
+ # Step 1: Read in the StaticObj (class) definitions, without checking
# whether or not the instance_children refer to valid StaticObj types.
sys.stderr.write('parsing the class definitions...')
static_tree_root.Parse(settings.lex)
diff --git a/tools/msi2lmp/frc_files/pcff.frc b/tools/msi2lmp/frc_files/pcff.frc
index ce24f000cb..a06b04202a 100644
--- a/tools/msi2lmp/frc_files/pcff.frc
+++ b/tools/msi2lmp/frc_files/pcff.frc
@@ -158,7 +158,7 @@
1.0 1 op 15.99940 O 2 sp2 aromatic in 5 membered ring
3.0 10 osh 15.99491 O 2 oxygen atom in terminal hydroxyl group on silicon
1.0 1 osi 16.00000 O 2 siloxane oxygen
- 3.0 10 oss 15.99491 O 2 oxygen atom betweem two silicons
+ 3.0 10 oss 15.99491 O 2 oxygen atom between two silicons
2.0 5 oz 15.99940 O 2 ester oxygen in carbonate
1.0 1 p 30.97380 P 4 general phosphorous atom
1.0 1 p= 30.97380 P 5 phosphazene phosphorous atom
--
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