From fd6e11f8217a0a58002b3eef6a80cceee27e905c Mon Sep 17 00:00:00 2001
From: Axel Kohlmeyer <akohlmey@gmail.com>
Date: Wed, 26 Jul 2017 14:29:17 -0400
Subject: [PATCH] convert copies of Install.py files to symlinks
---
lib/atc/Install.py | 92 +-------------------------------------------
lib/awpmd/Install.py | 92 +-------------------------------------------
lib/h5md/Install.py | 92 +-------------------------------------------
lib/meam/Install.py | 92 +-------------------------------------------
lib/poems/Install.py | 92 +-------------------------------------------
lib/qmmm/Install.py | 92 +-------------------------------------------
lib/reax/Install.py | 92 +-------------------------------------------
7 files changed, 7 insertions(+), 637 deletions(-)
mode change 100644 => 120000 lib/atc/Install.py
mode change 100644 => 120000 lib/awpmd/Install.py
mode change 100644 => 120000 lib/h5md/Install.py
mode change 100644 => 120000 lib/meam/Install.py
mode change 100644 => 120000 lib/poems/Install.py
mode change 100644 => 120000 lib/qmmm/Install.py
mode change 100644 => 120000 lib/reax/Install.py
diff --git a/lib/atc/Install.py b/lib/atc/Install.py
deleted file mode 100644
index 29270560a6..0000000000
--- a/lib/atc/Install.py
+++ /dev/null
@@ -1,91 +0,0 @@
-#!/usr/bin/env python
-
-# install.py tool to do a generic build of a library
-# soft linked to by many of the lib/Install.py files
-# used to automate the steps described in the corresponding lib/README
-
-import sys,commands,os
-
-# help message
-
-help = """
-Syntax from src dir: make lib-libname args="-m machine -e suffix"
-Syntax from lib dir: python Install.py -m machine -e suffix
-
-libname = name of lib dir (e.g. atc, colvars, h5md, meam, poems, etc)
-specify -m and optionally -e, order does not matter
-
- -m = peform a clean followed by "make -f Makefile.machine"
- machine = suffix of a lib/Makefile.* file
- -e = set EXTRAMAKE variable in Makefile.machine to Makefile.lammps.suffix
- does not alter existing Makefile.machine
-
-Examplesx:
-
-make lib-colvars args="-m g++" # build COLVARS lib with GNU g++ compiler
-make lib-meam args="-m ifort" # build MEAM lib with Intel ifort compiler
-"""
-
-# print error message or help
-
-def error(str=None):
- if not str: print help
- else: print "ERROR",str
- sys.exit()
-
-# parse args
-
-args = sys.argv[1:]
-nargs = len(args)
-if nargs == 0: error()
-
-machine = None
-extraflag = 0
-
-iarg = 0
-while iarg < nargs:
- if args[iarg] == "-m":
- if iarg+2 > nargs: error()
- machine = args[iarg+1]
- iarg += 2
- elif args[iarg] == "-e":
- if iarg+2 > nargs: error()
- extraflag = 1
- suffix = args[iarg+1]
- iarg += 2
- else: error()
-
-# set lib from working dir
-
-cwd = os.getcwd()
-lib = os.path.basename(cwd)
-
-# create Makefile.auto as copy of Makefile.machine
-# reset EXTRAMAKE if requested
-
-if not os.path.exists("Makefile.%s" % machine):
- error("lib/%s/Makefile.%s does not exist" % (lib,machine))
-
-lines = open("Makefile.%s" % machine,'r').readlines()
-fp = open("Makefile.auto",'w')
-
-for line in lines:
- words = line.split()
- if len(words) == 3 and extraflag and \
- words[0] == "EXTRAMAKE" and words[1] == '=':
- line = line.replace(words[2],"Makefile.lammps.%s" % suffix)
- print >>fp,line,
-
-fp.close()
-
-# make the library via Makefile.auto
-
-print "Building lib%s.a ..." % lib
-cmd = "make -f Makefile.auto clean; make -f Makefile.auto"
-txt = commands.getoutput(cmd)
-print txt
-
-if os.path.exists("lib%s.a" % lib): print "Build was successful"
-else: error("Build of lib/%s/lib%s.a was NOT successful" % (lib,lib))
-if not os.path.exists("Makefile.lammps"):
- print "lib/%s/Makefile.lammps was NOT created" % lib
diff --git a/lib/atc/Install.py b/lib/atc/Install.py
new file mode 120000
index 0000000000..ffe709d44c
--- /dev/null
+++ b/lib/atc/Install.py
@@ -0,0 +1 @@
+../Install.py
\ No newline at end of file
diff --git a/lib/awpmd/Install.py b/lib/awpmd/Install.py
deleted file mode 100644
index 29270560a6..0000000000
--- a/lib/awpmd/Install.py
+++ /dev/null
@@ -1,91 +0,0 @@
-#!/usr/bin/env python
-
-# install.py tool to do a generic build of a library
-# soft linked to by many of the lib/Install.py files
-# used to automate the steps described in the corresponding lib/README
-
-import sys,commands,os
-
-# help message
-
-help = """
-Syntax from src dir: make lib-libname args="-m machine -e suffix"
-Syntax from lib dir: python Install.py -m machine -e suffix
-
-libname = name of lib dir (e.g. atc, colvars, h5md, meam, poems, etc)
-specify -m and optionally -e, order does not matter
-
- -m = peform a clean followed by "make -f Makefile.machine"
- machine = suffix of a lib/Makefile.* file
- -e = set EXTRAMAKE variable in Makefile.machine to Makefile.lammps.suffix
- does not alter existing Makefile.machine
-
-Examplesx:
-
-make lib-colvars args="-m g++" # build COLVARS lib with GNU g++ compiler
-make lib-meam args="-m ifort" # build MEAM lib with Intel ifort compiler
-"""
-
-# print error message or help
-
-def error(str=None):
- if not str: print help
- else: print "ERROR",str
- sys.exit()
-
-# parse args
-
-args = sys.argv[1:]
-nargs = len(args)
-if nargs == 0: error()
-
-machine = None
-extraflag = 0
-
-iarg = 0
-while iarg < nargs:
- if args[iarg] == "-m":
- if iarg+2 > nargs: error()
- machine = args[iarg+1]
- iarg += 2
- elif args[iarg] == "-e":
- if iarg+2 > nargs: error()
- extraflag = 1
- suffix = args[iarg+1]
- iarg += 2
- else: error()
-
-# set lib from working dir
-
-cwd = os.getcwd()
-lib = os.path.basename(cwd)
-
-# create Makefile.auto as copy of Makefile.machine
-# reset EXTRAMAKE if requested
-
-if not os.path.exists("Makefile.%s" % machine):
- error("lib/%s/Makefile.%s does not exist" % (lib,machine))
-
-lines = open("Makefile.%s" % machine,'r').readlines()
-fp = open("Makefile.auto",'w')
-
-for line in lines:
- words = line.split()
- if len(words) == 3 and extraflag and \
- words[0] == "EXTRAMAKE" and words[1] == '=':
- line = line.replace(words[2],"Makefile.lammps.%s" % suffix)
- print >>fp,line,
-
-fp.close()
-
-# make the library via Makefile.auto
-
-print "Building lib%s.a ..." % lib
-cmd = "make -f Makefile.auto clean; make -f Makefile.auto"
-txt = commands.getoutput(cmd)
-print txt
-
-if os.path.exists("lib%s.a" % lib): print "Build was successful"
-else: error("Build of lib/%s/lib%s.a was NOT successful" % (lib,lib))
-if not os.path.exists("Makefile.lammps"):
- print "lib/%s/Makefile.lammps was NOT created" % lib
diff --git a/lib/awpmd/Install.py b/lib/awpmd/Install.py
new file mode 120000
index 0000000000..ffe709d44c
--- /dev/null
+++ b/lib/awpmd/Install.py
@@ -0,0 +1 @@
+../Install.py
\ No newline at end of file
diff --git a/lib/h5md/Install.py b/lib/h5md/Install.py
deleted file mode 100644
index 29270560a6..0000000000
--- a/lib/h5md/Install.py
+++ /dev/null
@@ -1,91 +0,0 @@
-#!/usr/bin/env python
-
-# install.py tool to do a generic build of a library
-# soft linked to by many of the lib/Install.py files
-# used to automate the steps described in the corresponding lib/README
-
-import sys,commands,os
-
-# help message
-
-help = """
-Syntax from src dir: make lib-libname args="-m machine -e suffix"
-Syntax from lib dir: python Install.py -m machine -e suffix
-
-libname = name of lib dir (e.g. atc, colvars, h5md, meam, poems, etc)
-specify -m and optionally -e, order does not matter
-
- -m = peform a clean followed by "make -f Makefile.machine"
- machine = suffix of a lib/Makefile.* file
- -e = set EXTRAMAKE variable in Makefile.machine to Makefile.lammps.suffix
- does not alter existing Makefile.machine
-
-Examplesx:
-
-make lib-colvars args="-m g++" # build COLVARS lib with GNU g++ compiler
-make lib-meam args="-m ifort" # build MEAM lib with Intel ifort compiler
-"""
-
-# print error message or help
-
-def error(str=None):
- if not str: print help
- else: print "ERROR",str
- sys.exit()
-
-# parse args
-
-args = sys.argv[1:]
-nargs = len(args)
-if nargs == 0: error()
-
-machine = None
-extraflag = 0
-
-iarg = 0
-while iarg < nargs:
- if args[iarg] == "-m":
- if iarg+2 > nargs: error()
- machine = args[iarg+1]
- iarg += 2
- elif args[iarg] == "-e":
- if iarg+2 > nargs: error()
- extraflag = 1
- suffix = args[iarg+1]
- iarg += 2
- else: error()
-
-# set lib from working dir
-
-cwd = os.getcwd()
-lib = os.path.basename(cwd)
-
-# create Makefile.auto as copy of Makefile.machine
-# reset EXTRAMAKE if requested
-
-if not os.path.exists("Makefile.%s" % machine):
- error("lib/%s/Makefile.%s does not exist" % (lib,machine))
-
-lines = open("Makefile.%s" % machine,'r').readlines()
-fp = open("Makefile.auto",'w')
-
-for line in lines:
- words = line.split()
- if len(words) == 3 and extraflag and \
- words[0] == "EXTRAMAKE" and words[1] == '=':
- line = line.replace(words[2],"Makefile.lammps.%s" % suffix)
- print >>fp,line,
-
-fp.close()
-
-# make the library via Makefile.auto
-
-print "Building lib%s.a ..." % lib
-cmd = "make -f Makefile.auto clean; make -f Makefile.auto"
-txt = commands.getoutput(cmd)
-print txt
-
-if os.path.exists("lib%s.a" % lib): print "Build was successful"
-else: error("Build of lib/%s/lib%s.a was NOT successful" % (lib,lib))
-if not os.path.exists("Makefile.lammps"):
- print "lib/%s/Makefile.lammps was NOT created" % lib
diff --git a/lib/h5md/Install.py b/lib/h5md/Install.py
new file mode 120000
index 0000000000..ffe709d44c
--- /dev/null
+++ b/lib/h5md/Install.py
@@ -0,0 +1 @@
+../Install.py
\ No newline at end of file
diff --git a/lib/meam/Install.py b/lib/meam/Install.py
deleted file mode 100644
index 29270560a6..0000000000
--- a/lib/meam/Install.py
+++ /dev/null
@@ -1,91 +0,0 @@
-#!/usr/bin/env python
-
-# install.py tool to do a generic build of a library
-# soft linked to by many of the lib/Install.py files
-# used to automate the steps described in the corresponding lib/README
-
-import sys,commands,os
-
-# help message
-
-help = """
-Syntax from src dir: make lib-libname args="-m machine -e suffix"
-Syntax from lib dir: python Install.py -m machine -e suffix
-
-libname = name of lib dir (e.g. atc, colvars, h5md, meam, poems, etc)
-specify -m and optionally -e, order does not matter
-
- -m = peform a clean followed by "make -f Makefile.machine"
- machine = suffix of a lib/Makefile.* file
- -e = set EXTRAMAKE variable in Makefile.machine to Makefile.lammps.suffix
- does not alter existing Makefile.machine
-
-Examplesx:
-
-make lib-colvars args="-m g++" # build COLVARS lib with GNU g++ compiler
-make lib-meam args="-m ifort" # build MEAM lib with Intel ifort compiler
-"""
-
-# print error message or help
-
-def error(str=None):
- if not str: print help
- else: print "ERROR",str
- sys.exit()
-
-# parse args
-
-args = sys.argv[1:]
-nargs = len(args)
-if nargs == 0: error()
-
-machine = None
-extraflag = 0
-
-iarg = 0
-while iarg < nargs:
- if args[iarg] == "-m":
- if iarg+2 > nargs: error()
- machine = args[iarg+1]
- iarg += 2
- elif args[iarg] == "-e":
- if iarg+2 > nargs: error()
- extraflag = 1
- suffix = args[iarg+1]
- iarg += 2
- else: error()
-
-# set lib from working dir
-
-cwd = os.getcwd()
-lib = os.path.basename(cwd)
-
-# create Makefile.auto as copy of Makefile.machine
-# reset EXTRAMAKE if requested
-
-if not os.path.exists("Makefile.%s" % machine):
- error("lib/%s/Makefile.%s does not exist" % (lib,machine))
-
-lines = open("Makefile.%s" % machine,'r').readlines()
-fp = open("Makefile.auto",'w')
-
-for line in lines:
- words = line.split()
- if len(words) == 3 and extraflag and \
- words[0] == "EXTRAMAKE" and words[1] == '=':
- line = line.replace(words[2],"Makefile.lammps.%s" % suffix)
- print >>fp,line,
-
-fp.close()
-
-# make the library via Makefile.auto
-
-print "Building lib%s.a ..." % lib
-cmd = "make -f Makefile.auto clean; make -f Makefile.auto"
-txt = commands.getoutput(cmd)
-print txt
-
-if os.path.exists("lib%s.a" % lib): print "Build was successful"
-else: error("Build of lib/%s/lib%s.a was NOT successful" % (lib,lib))
-if not os.path.exists("Makefile.lammps"):
- print "lib/%s/Makefile.lammps was NOT created" % lib
diff --git a/lib/meam/Install.py b/lib/meam/Install.py
new file mode 120000
index 0000000000..ffe709d44c
--- /dev/null
+++ b/lib/meam/Install.py
@@ -0,0 +1 @@
+../Install.py
\ No newline at end of file
diff --git a/lib/poems/Install.py b/lib/poems/Install.py
deleted file mode 100644
index 29270560a6..0000000000
--- a/lib/poems/Install.py
+++ /dev/null
@@ -1,91 +0,0 @@
-#!/usr/bin/env python
-
-# install.py tool to do a generic build of a library
-# soft linked to by many of the lib/Install.py files
-# used to automate the steps described in the corresponding lib/README
-
-import sys,commands,os
-
-# help message
-
-help = """
-Syntax from src dir: make lib-libname args="-m machine -e suffix"
-Syntax from lib dir: python Install.py -m machine -e suffix
-
-libname = name of lib dir (e.g. atc, colvars, h5md, meam, poems, etc)
-specify -m and optionally -e, order does not matter
-
- -m = peform a clean followed by "make -f Makefile.machine"
- machine = suffix of a lib/Makefile.* file
- -e = set EXTRAMAKE variable in Makefile.machine to Makefile.lammps.suffix
- does not alter existing Makefile.machine
-
-Examplesx:
-
-make lib-colvars args="-m g++" # build COLVARS lib with GNU g++ compiler
-make lib-meam args="-m ifort" # build MEAM lib with Intel ifort compiler
-"""
-
-# print error message or help
-
-def error(str=None):
- if not str: print help
- else: print "ERROR",str
- sys.exit()
-
-# parse args
-
-args = sys.argv[1:]
-nargs = len(args)
-if nargs == 0: error()
-
-machine = None
-extraflag = 0
-
-iarg = 0
-while iarg < nargs:
- if args[iarg] == "-m":
- if iarg+2 > nargs: error()
- machine = args[iarg+1]
- iarg += 2
- elif args[iarg] == "-e":
- if iarg+2 > nargs: error()
- extraflag = 1
- suffix = args[iarg+1]
- iarg += 2
- else: error()
-
-# set lib from working dir
-
-cwd = os.getcwd()
-lib = os.path.basename(cwd)
-
-# create Makefile.auto as copy of Makefile.machine
-# reset EXTRAMAKE if requested
-
-if not os.path.exists("Makefile.%s" % machine):
- error("lib/%s/Makefile.%s does not exist" % (lib,machine))
-
-lines = open("Makefile.%s" % machine,'r').readlines()
-fp = open("Makefile.auto",'w')
-
-for line in lines:
- words = line.split()
- if len(words) == 3 and extraflag and \
- words[0] == "EXTRAMAKE" and words[1] == '=':
- line = line.replace(words[2],"Makefile.lammps.%s" % suffix)
- print >>fp,line,
-
-fp.close()
-
-# make the library via Makefile.auto
-
-print "Building lib%s.a ..." % lib
-cmd = "make -f Makefile.auto clean; make -f Makefile.auto"
-txt = commands.getoutput(cmd)
-print txt
-
-if os.path.exists("lib%s.a" % lib): print "Build was successful"
-else: error("Build of lib/%s/lib%s.a was NOT successful" % (lib,lib))
-if not os.path.exists("Makefile.lammps"):
- print "lib/%s/Makefile.lammps was NOT created" % lib
diff --git a/lib/poems/Install.py b/lib/poems/Install.py
new file mode 120000
index 0000000000..ffe709d44c
--- /dev/null
+++ b/lib/poems/Install.py
@@ -0,0 +1 @@
+../Install.py
\ No newline at end of file
diff --git a/lib/qmmm/Install.py b/lib/qmmm/Install.py
deleted file mode 100644
index 29270560a6..0000000000
--- a/lib/qmmm/Install.py
+++ /dev/null
@@ -1,91 +0,0 @@
-#!/usr/bin/env python
-
-# install.py tool to do a generic build of a library
-# soft linked to by many of the lib/Install.py files
-# used to automate the steps described in the corresponding lib/README
-
-import sys,commands,os
-
-# help message
-
-help = """
-Syntax from src dir: make lib-libname args="-m machine -e suffix"
-Syntax from lib dir: python Install.py -m machine -e suffix
-
-libname = name of lib dir (e.g. atc, colvars, h5md, meam, poems, etc)
-specify -m and optionally -e, order does not matter
-
- -m = peform a clean followed by "make -f Makefile.machine"
- machine = suffix of a lib/Makefile.* file
- -e = set EXTRAMAKE variable in Makefile.machine to Makefile.lammps.suffix
- does not alter existing Makefile.machine
-
-Examplesx:
-
-make lib-colvars args="-m g++" # build COLVARS lib with GNU g++ compiler
-make lib-meam args="-m ifort" # build MEAM lib with Intel ifort compiler
-"""
-
-# print error message or help
-
-def error(str=None):
- if not str: print help
- else: print "ERROR",str
- sys.exit()
-
-# parse args
-
-args = sys.argv[1:]
-nargs = len(args)
-if nargs == 0: error()
-
-machine = None
-extraflag = 0
-
-iarg = 0
-while iarg < nargs:
- if args[iarg] == "-m":
- if iarg+2 > nargs: error()
- machine = args[iarg+1]
- iarg += 2
- elif args[iarg] == "-e":
- if iarg+2 > nargs: error()
- extraflag = 1
- suffix = args[iarg+1]
- iarg += 2
- else: error()
-
-# set lib from working dir
-
-cwd = os.getcwd()
-lib = os.path.basename(cwd)
-
-# create Makefile.auto as copy of Makefile.machine
-# reset EXTRAMAKE if requested
-
-if not os.path.exists("Makefile.%s" % machine):
- error("lib/%s/Makefile.%s does not exist" % (lib,machine))
-
-lines = open("Makefile.%s" % machine,'r').readlines()
-fp = open("Makefile.auto",'w')
-
-for line in lines:
- words = line.split()
- if len(words) == 3 and extraflag and \
- words[0] == "EXTRAMAKE" and words[1] == '=':
- line = line.replace(words[2],"Makefile.lammps.%s" % suffix)
- print >>fp,line,
-
-fp.close()
-
-# make the library via Makefile.auto
-
-print "Building lib%s.a ..." % lib
-cmd = "make -f Makefile.auto clean; make -f Makefile.auto"
-txt = commands.getoutput(cmd)
-print txt
-
-if os.path.exists("lib%s.a" % lib): print "Build was successful"
-else: error("Build of lib/%s/lib%s.a was NOT successful" % (lib,lib))
-if not os.path.exists("Makefile.lammps"):
- print "lib/%s/Makefile.lammps was NOT created" % lib
diff --git a/lib/qmmm/Install.py b/lib/qmmm/Install.py
new file mode 120000
index 0000000000..ffe709d44c
--- /dev/null
+++ b/lib/qmmm/Install.py
@@ -0,0 +1 @@
+../Install.py
\ No newline at end of file
diff --git a/lib/reax/Install.py b/lib/reax/Install.py
deleted file mode 100644
index 29270560a6..0000000000
--- a/lib/reax/Install.py
+++ /dev/null
@@ -1,91 +0,0 @@
-#!/usr/bin/env python
-
-# install.py tool to do a generic build of a library
-# soft linked to by many of the lib/Install.py files
-# used to automate the steps described in the corresponding lib/README
-
-import sys,commands,os
-
-# help message
-
-help = """
-Syntax from src dir: make lib-libname args="-m machine -e suffix"
-Syntax from lib dir: python Install.py -m machine -e suffix
-
-libname = name of lib dir (e.g. atc, colvars, h5md, meam, poems, etc)
-specify -m and optionally -e, order does not matter
-
- -m = peform a clean followed by "make -f Makefile.machine"
- machine = suffix of a lib/Makefile.* file
- -e = set EXTRAMAKE variable in Makefile.machine to Makefile.lammps.suffix
- does not alter existing Makefile.machine
-
-Examplesx:
-
-make lib-colvars args="-m g++" # build COLVARS lib with GNU g++ compiler
-make lib-meam args="-m ifort" # build MEAM lib with Intel ifort compiler
-"""
-
-# print error message or help
-
-def error(str=None):
- if not str: print help
- else: print "ERROR",str
- sys.exit()
-
-# parse args
-
-args = sys.argv[1:]
-nargs = len(args)
-if nargs == 0: error()
-
-machine = None
-extraflag = 0
-
-iarg = 0
-while iarg < nargs:
- if args[iarg] == "-m":
- if iarg+2 > nargs: error()
- machine = args[iarg+1]
- iarg += 2
- elif args[iarg] == "-e":
- if iarg+2 > nargs: error()
- extraflag = 1
- suffix = args[iarg+1]
- iarg += 2
- else: error()
-
-# set lib from working dir
-
-cwd = os.getcwd()
-lib = os.path.basename(cwd)
-
-# create Makefile.auto as copy of Makefile.machine
-# reset EXTRAMAKE if requested
-
-if not os.path.exists("Makefile.%s" % machine):
- error("lib/%s/Makefile.%s does not exist" % (lib,machine))
-
-lines = open("Makefile.%s" % machine,'r').readlines()
-fp = open("Makefile.auto",'w')
-
-for line in lines:
- words = line.split()
- if len(words) == 3 and extraflag and \
- words[0] == "EXTRAMAKE" and words[1] == '=':
- line = line.replace(words[2],"Makefile.lammps.%s" % suffix)
- print >>fp,line,
-
-fp.close()
-
-# make the library via Makefile.auto
-
-print "Building lib%s.a ..." % lib
-cmd = "make -f Makefile.auto clean; make -f Makefile.auto"
-txt = commands.getoutput(cmd)
-print txt
-
-if os.path.exists("lib%s.a" % lib): print "Build was successful"
-else: error("Build of lib/%s/lib%s.a was NOT successful" % (lib,lib))
-if not os.path.exists("Makefile.lammps"):
- print "lib/%s/Makefile.lammps was NOT created" % lib
diff --git a/lib/reax/Install.py b/lib/reax/Install.py
new file mode 120000
index 0000000000..ffe709d44c
--- /dev/null
+++ b/lib/reax/Install.py
@@ -0,0 +1 @@
+../Install.py
\ No newline at end of file
--
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