diff --git a/src/aliby/utils/vis_tools.py b/src/aliby/utils/vis_tools.py index 3d4caef4e1c7c2fb460df42fb64423e6200d34b3..7d688211cf5630a945ee2a2617f2a0cfcfd034bb 100644 --- a/src/aliby/utils/vis_tools.py +++ b/src/aliby/utils/vis_tools.py @@ -63,7 +63,8 @@ def get_cellmasks_at_times(results_path: str, timepoints: t.List[int] = [0]): def concatenate_dims(ndarray, axis1: int, axis2: int): - return np.concatenate(np.moveaxis(ndarray, axis1, 0), axis=axis2) + axis2 = len(ndarray.shape) + axis2 if axis2 < 0 else axis2 + return np.concatenate(np.moveaxis(ndarray, axis1, 0), axis=axis2 - 1) def get_tile_mask_pairs(