From 38dd18beb23cfa19716c6ae8c7c174c2933b2a1c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Thu, 11 Nov 2021 15:04:15 +0000
Subject: [PATCH] add proceses to defaults
Former-commit-id: 8a0abf87529dce62f1931659224165dabcde9632
---
core/processor.py | 47 ++++++++++++++++++++++-------------------------
1 file changed, 22 insertions(+), 25 deletions(-)
diff --git a/core/processor.py b/core/processor.py
index 70d473bd..00ff333c 100644
--- a/core/processor.py
+++ b/core/processor.py
@@ -62,6 +62,16 @@ class PostProcessorParameters(ParametersABC):
"dsignal",
[
"/extraction/general/None/volume",
+ "/postprocessing/bud_metric/extraction_general_None_volume",
+ ],
+ ],
+ [
+ "aggregate",
+ [
+ "/extraction/general/None/volume",
+ "postprocessing/bud_metric/extraction_general_None_volume",
+ "postprocessing/dsignal/extraction_general_None_volume",
+ "postprocessing/dsignal/postprocessing_bud_metric_extraction_general_None_volume",
],
],
],
@@ -78,7 +88,6 @@ class PostProcessorParameters(ParametersABC):
targets["processes"]["bud_metric"].append(
[
[
- "/extraction/general/None/volume",
"/extraction/em_ratio/np_max/mean",
"/extraction/em_ratio/np_max/median",
],
@@ -90,35 +99,23 @@ class PostProcessorParameters(ParametersABC):
"/extraction/em_ratio/np_max/median",
"/extraction/em_ratio_bgsub/np_max/mean",
"/extraction/em_ratio_bgsub/np_max/median",
- "/postprocessing/bud_metric/extraction_general_None_volume",
"/postprocessing/bud_metric/extraction_em_ratio_np_max_mean",
"/postprocessing/bud_metric/extraction_em_ratio_np_max_median",
]
)
- targets["processes"].append(
+ targets["processes"]["aggregate"].append(
[
- [
- "aggregate",
- [
- [
- "/extraction/general/None/volume",
- "/extraction/em_ratio/np_max/mean",
- "/extraction/em_ratio/np_max/median",
- "/extraction/em_ratio_bgsub/np_max/mean",
- "/extraction/em_ratio_bgsub/np_max/median",
- "/extraction/gsum/np_max/median",
- "/extraction/gsum/np_max/mean",
- "postprocessing/bud_metric/extraction_general_None_volume",
- "postprocessing/bud_metric/extraction_em_ratio_np_max_mean",
- "postprocessing/bud_metric/extraction_em_ratio_np_max_median",
- "postprocessing/dsignal/extraction_general_None_volume",
- "postprocessing/dsignal/postprocessing_bud_metric_extraction_general_None_volume",
- "postprocessing/dsignal/postprocessing_bud_metric_extraction_em_ratio_np_max_median",
- "postprocessing/dsignal/postprocessing_bud_metric_extraction_em_ratio_np_max_mean",
- ]
- ],
- ]
- ]
+ "/extraction/em_ratio/np_max/mean",
+ "/extraction/em_ratio/np_max/median",
+ "/extraction/em_ratio_bgsub/np_max/mean",
+ "/extraction/em_ratio_bgsub/np_max/median",
+ "/extraction/gsum/np_max/median",
+ "/extraction/gsum/np_max/mean",
+ "postprocessing/bud_metric/extraction_em_ratio_np_max_mean",
+ "postprocessing/bud_metric/extraction_em_ratio_np_max_median",
+ "postprocessing/dsignal/postprocessing_bud_metric_extraction_em_ratio_np_max_median",
+ "postprocessing/dsignal/postprocessing_bud_metric_extraction_em_ratio_np_max_mean",
+ ],
)
outpaths["aggregate"].append(
["/postprocessing/experiment_wide/aggregated/"]
--
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