From 6ac4dedb83801fec35cc39a904a9a16f625245fd Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <alan.munoz@ed.ac.uk>
Date: Tue, 24 Jan 2023 12:09:56 +0000
Subject: [PATCH] clean(pipe): Remove comments
---
src/aliby/pipeline.py | 36 +-----------------------------------
1 file changed, 1 insertion(+), 35 deletions(-)
diff --git a/src/aliby/pipeline.py b/src/aliby/pipeline.py
index e2590430..e81e982e 100644
--- a/src/aliby/pipeline.py
+++ b/src/aliby/pipeline.py
@@ -20,7 +20,7 @@ from agora.abc import ParametersABC, ProcessABC
from agora.io.metadata import MetaData, parse_logfiles
from agora.io.reader import StateReader
from agora.io.signal import Signal
-from agora.io.writer import ( # BabyWriter,
+from agora.io.writer import (
LinearBabyWriter,
StateWriter,
TilerWriter,
@@ -34,8 +34,6 @@ from extraction.core.extractor import Extractor, ExtractorParameters
from extraction.core.functions.defaults import exparams_from_meta
from postprocessor.core.processor import PostProcessor, PostProcessorParameters
-# from postprocessor.compiler import ExperimentCompiler, PageOrganiser
-
class PipelineParameters(ParametersABC):
_pool_index = None
@@ -536,15 +534,6 @@ class Pipeline(ProcessABC):
finally:
_close_session(session)
- # try:
- # compiler = ExperimentCompiler(None, filepath)
- # tmp = compiler.run()
- # po = PageOrganiser(tmp, grid_spec=(3, 2))
- # po.plot()
- # po.save(fullpath / f"{directory}report.pdf")
- # except Exception as e:
- # print("Report failed: {}".format(e))
-
@staticmethod
def check_earlystop(filename: str, es_parameters: dict, tile_size: int):
s = Signal(filename)
@@ -700,29 +689,6 @@ class Pipeline(ProcessABC):
except Exception:
pass
- # Delete datasets to overwrite and update pipeline data
- # Use existing parameters
- # with h5py.File(filename, "a") as f:
- # pparams = PipelineParameters.from_yaml(
- # f.attrs["parameters"]
- # ).to_dict()
-
- # for k, v in ow.items():
- # if v:
- # for gname in self.writer_groups[k]:
- # if gname in f:
- # del f[gname]
-
- # pparams[k] = config[k]
- # meta.add_fields(
- # {
- # "parameters": PipelineParameters.from_dict(
- # pparams
- # ).to_yaml()
- # },
- # overwrite=True,
- # )
-
meta.run()
meta.add_fields( # Add non-logfile metadata
{
--
GitLab