From 6d38194c14dbd292818b708fd48507907e95f607 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Mon, 11 Oct 2021 18:46:41 +0100
Subject: [PATCH] change defaults temporarily to quickly get images
Former-commit-id: b2b8c6ca8db9750e538e15a709d4d8d4a0a86eef
---
core/processor.py | 23 ++++++++++++++++++++---
1 file changed, 20 insertions(+), 3 deletions(-)
diff --git a/core/processor.py b/core/processor.py
index d4f9584e..ef3e0336 100644
--- a/core/processor.py
+++ b/core/processor.py
@@ -57,6 +57,20 @@ class PostProcessorParameters(ParametersABC):
"/postprocessing/bud_metric/extraction_general_None_volume"
],
),
+ (
+ "aggregate",
+ [
+ [
+ "/extraction/em_ratio/np_max/mean",
+ "/extraction/em_ratio/np_max/median",
+ "/extraction/em_ratio_bgsub/np_max/mean",
+ "/extraction/em_ratio_bgsub/np_max/median",
+ "/extraction/gsum_bgsub/np_max/median",
+ "/extraction/gsum_bgsub/np_max/median",
+ "postprocessing/dsignal/postprocessing_bud_metric_extraction_general_None_volume",
+ ]
+ ],
+ ),
# "savgol": ["/extraction/general/None/area"],
),
},
@@ -66,7 +80,7 @@ class PostProcessorParameters(ParametersABC):
"picker": pickerParameters.default(),
}
},
- outpaths={},
+ outpaths={"aggregate": "/postprocessing/experiment_wide/aggregated/"},
)
def to_dict(self):
@@ -250,16 +264,19 @@ class PostProcessor:
else:
raise ("Outpath not defined", type(dataset))
+ if process not in self.parameters.to_dict()["outpaths"]:
+ outpath = "/postprocessing/" + process + "/" + outpath
+
if isinstance(result, dict): # Multiple Signals as output
for k, v in result:
self.write_result(
- "/postprocessing/" + process + "/" + outpath + f"/{k}",
+ outpath + f"/{k}",
v,
metadata={},
)
else:
self.write_result(
- "/postprocessing/" + process + "/" + outpath,
+ outpath,
result,
metadata={},
)
--
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