From a6f5a318435c29e2a509c8b624657e143138c59c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <alan.munoz@ed.ac.uk> Date: Wed, 28 Sep 2022 13:52:00 +0100 Subject: [PATCH] docs(README): update unused sections --- README.md | 12 ++---------- 1 file changed, 2 insertions(+), 10 deletions(-) diff --git a/README.md b/README.md index 7ac9f31d..5b555746 100644 --- a/README.md +++ b/README.md @@ -44,6 +44,7 @@ See our [installation instructions]( https://aliby.readthedocs.io/en/latest/INST ### Raw data access +ALIBY's tooling can also be used as an interface to OMERO servers, taking care of fetching data when needed. ```python from aliby.io.dataset import Dataset from aliby.io.image import Image @@ -96,15 +97,6 @@ trap_tps = riv.get_trap_timepoints(trap_id, trange, ncols) This can take several seconds at the moment. For a speed-up: take fewer z-positions if you can. -If you're not sure what indices to use: -```python -seg_expt.channels # Get a list of channels -channel = 'Brightfield' -ch_id = seg_expt.get_channel_index(channel) - -n_traps = seg_expt.n_traps # Get the number of traps -``` - #### Get the traps for a given time point Alternatively, if you want to get all the traps at a given timepoint: @@ -116,4 +108,4 @@ seg_expt.get_tiles_timepoints(timepoint, tile_size=96, channels=None, ### Contributing -See [CONTRIBUTING.md](./CONTRIBUTING.md) for installation instructions. +See [CONTRIBUTING](https://aliby.readthedocs.io/en/latest/INSTALL.html) on how to help out or get involved. -- GitLab