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aliby
aliby
Commits
a6f5a318
Commit
a6f5a318
authored
Sep 28, 2022
by
Alán Muñoz
Browse files
docs(README): update unused sections
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README.md
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a6f5a318
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@@ -44,6 +44,7 @@ See our [installation instructions]( https://aliby.readthedocs.io/en/latest/INST
### Raw data access
ALIBY's tooling can also be used as an interface to OMERO servers, taking care of fetching data when needed.
```
python
from
aliby.io.dataset
import
Dataset
from
aliby.io.image
import
Image
...
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@@ -96,15 +97,6 @@ trap_tps = riv.get_trap_timepoints(trap_id, trange, ncols)
This can take several seconds at the moment.
For a speed-up: take fewer z-positions if you can.
If you're not sure what indices to use:
```
python
seg_expt
.
channels
# Get a list of channels
channel
=
'Brightfield'
ch_id
=
seg_expt
.
get_channel_index
(
channel
)
n_traps
=
seg_expt
.
n_traps
# Get the number of traps
```
#### Get the traps for a given time point
Alternatively, if you want to get all the traps at a given timepoint:
...
...
@@ -116,4 +108,4 @@ seg_expt.get_tiles_timepoints(timepoint, tile_size=96, channels=None,
### Contributing
See
[
CONTRIBUTING
.md
](
./CONTRIBUTING.md
)
for installation instructions
.
See
[
CONTRIBUTING
](
https://aliby.readthedocs.io/en/latest/INSTALL.html
)
on how to help out or get involved
.
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