diff --git a/scripts/postprocess.py b/scripts/postprocess.py index 48ae0edd3166e19c37841f2837408986c1cc4814..bccbb374a53a9b2d4bf6baaad245c5b64a278568 100644 --- a/scripts/postprocess.py +++ b/scripts/postprocess.py @@ -5,9 +5,7 @@ from postprocessor.core.processor import PostProcessorParameters, PostProcessor from pathlib import Path -fpath = Path( - "/home/alan/Documents/dev/stoa_libs/pipeline-core/data/2021_11_04_doseResponse_raf_1_15_2_glu_01_2_dual_phluorin_whi5_constantMedia_00/glu_01_016.h5" -) +fpath = Path("/home/alan/Downloads/Vph1_005.h5") with h5py.File(fpath, "a") as f: if "postprocessing" in f: @@ -18,3 +16,13 @@ with h5py.File(fpath, "a") as f: params = PostProcessorParameters.default().to_dict() pp = PostProcessor(fpath, params) pp.run() + +from aliby.io.signal import Signal + +s = Signal(fpath) +vol = s["extraction/general/None/volume"] +import seaborn as sns +import matplotlib.pyplot as plt + +sns.heatmap(vol.sort_index(), robust=True) +plt.show()