From 00e7656f68ca6b53b5cd8fb367d02adfa6957c3c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Sat, 18 Dec 2021 13:38:29 +0000
Subject: [PATCH] Vph1 test file to postprocess.py script
---
scripts/postprocess.py | 14 +++++++++++---
1 file changed, 11 insertions(+), 3 deletions(-)
diff --git a/scripts/postprocess.py b/scripts/postprocess.py
index 48ae0edd..bccbb374 100644
--- a/scripts/postprocess.py
+++ b/scripts/postprocess.py
@@ -5,9 +5,7 @@ from postprocessor.core.processor import PostProcessorParameters, PostProcessor
from pathlib import Path
-fpath = Path(
- "/home/alan/Documents/dev/stoa_libs/pipeline-core/data/2021_11_04_doseResponse_raf_1_15_2_glu_01_2_dual_phluorin_whi5_constantMedia_00/glu_01_016.h5"
-)
+fpath = Path("/home/alan/Downloads/Vph1_005.h5")
with h5py.File(fpath, "a") as f:
if "postprocessing" in f:
@@ -18,3 +16,13 @@ with h5py.File(fpath, "a") as f:
params = PostProcessorParameters.default().to_dict()
pp = PostProcessor(fpath, params)
pp.run()
+
+from aliby.io.signal import Signal
+
+s = Signal(fpath)
+vol = s["extraction/general/None/volume"]
+import seaborn as sns
+import matplotlib.pyplot as plt
+
+sns.heatmap(vol.sort_index(), robust=True)
+plt.show()
--
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