From 03aa7afcf578f6a802257a0221b9f74d3820753d Mon Sep 17 00:00:00 2001
From: Arin Wongprommoon <arin.wongprommoon@ed.ac.uk>
Date: Tue, 17 Jan 2023 09:47:31 +0000
Subject: [PATCH] fix(aliby): list of channels in dummy tiler matches number of
channels
WHY IS THIS CHANGE NEEDED?:
- consistency
HOW DOES THE CHANGE SOLVE THE PROBLEM?:
- fill in unspecified channels with 'nil' -- normally this information
is fetched from metadata, which we don't have for this dummy
---
src/aliby/tile/tiler.py | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/src/aliby/tile/tiler.py b/src/aliby/tile/tiler.py
index e8ea4a97..74aae3e8 100644
--- a/src/aliby/tile/tiler.py
+++ b/src/aliby/tile/tiler.py
@@ -264,7 +264,10 @@ class Tiler(StepABC):
"size_z": dummy_image.shape[2],
"size_c": dummy_image.shape[1],
"size_t": dummy_image.shape[0],
- "channels": [parameters["ref_channel"]],
+ "channels": [
+ parameters["ref_channel"],
+ *(["nil"] * (dummy_image.shape[1] - 1)),
+ ],
"name": " ",
}
--
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