From 1198de064ed13528693315bce76f8f40b97540b6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Tue, 9 Aug 2022 19:02:01 +0100
Subject: [PATCH] chore(tomlock): bump version

---
 poetry.lock    | 1789 +++++-------------------------------------------
 pyproject.toml |    4 +-
 2 files changed, 185 insertions(+), 1608 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index b1726990..1b6d992d 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -27,7 +27,7 @@ python-versions = "*"
 
 [[package]]
 name = "aliby-agora"
-version = "0.2.31"
+version = "0.2.32"
 description = "A gathering of shared utilities for the Swain Lab image processing pipeline."
 category = "main"
 optional = false
@@ -69,14 +69,14 @@ xgboost = "1.4.2"
 
 [[package]]
 name = "aliby-post"
-version = "0.1.32"
+version = "0.1.34"
 description = "Post-processing tools for aliby pipeline."
 category = "main"
 optional = false
 python-versions = ">=3.7.1,<3.11"
 
 [package.dependencies]
-aliby-agora = ">=0.2.31,<0.3.0"
+aliby-agora = ">=0.2.32,<0.3.0"
 gaussianprocessderivatives = ">=0.1.2,<0.2.0"
 leidenalg = ">=0.8.8,<0.9.0"
 more-itertools = ">=8.12.0,<9.0.0"
@@ -990,9 +990,9 @@ numpy = ">=1.9.1"
 six = ">=1.9.0"
 
 [package.extras]
-image = ["scipy (>=0.14)", "Pillow (>=5.2.0)"]
+tests = ["pytest-cov", "pytest-xdist", "pytest", "keras", "tensorflow", "pillow", "pandas"]
 pep8 = ["flake8"]
-tests = ["pandas", "pillow", "tensorflow", "keras", "pytest", "pytest-xdist", "pytest-cov"]
+image = ["Pillow (>=5.2.0)", "scipy (>=0.14)"]
 
 [[package]]
 name = "keras-tuner"
@@ -1322,7 +1322,7 @@ Jinja2 = ">=2.10"
 sphinx = ">=3.0"
 
 [package.extras]
-testing = ["pytest", "pytest-cov", "matplotlib"]
+testing = ["matplotlib", "pytest-cov", "pytest"]
 
 [[package]]
 name = "oauthlib"
@@ -1459,7 +1459,7 @@ locket = "*"
 toolz = "*"
 
 [package.extras]
-complete = ["numpy (>=1.9.0)", "pandas (>=0.19.0)", "pyzmq", "blosc"]
+complete = ["blosc", "pyzmq", "pandas (>=0.19.0)", "numpy (>=1.9.0)"]
 
 [[package]]
 name = "pathos"
@@ -1546,8 +1546,8 @@ python-versions = ">=3.6"
 importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}
 
 [package.extras]
-dev = ["pre-commit", "tox"]
-testing = ["pytest", "pytest-benchmark"]
+testing = ["pytest-benchmark", "pytest"]
+dev = ["tox", "pre-commit"]
 
 [[package]]
 name = "pox"
@@ -1872,7 +1872,7 @@ python-versions = ">=3.7"
 packaging = "*"
 
 [package.extras]
-test = ["pytest (>=6,!=7.0.0,!=7.0.1)", "pytest-cov (>=3.0.0)", "pytest-qt"]
+test = ["pytest-qt", "pytest-cov (>=3.0.0)", "pytest (>=6,!=7.0.0,!=7.0.1)"]
 
 [[package]]
 name = "ray"
@@ -2129,8 +2129,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-lint = ["flake8", "mypy", "docutils-stubs"]
 test = ["pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-devhelp"
@@ -2141,8 +2141,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-lint = ["flake8", "mypy", "docutils-stubs"]
 test = ["pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-htmlhelp"
@@ -2153,8 +2153,8 @@ optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-lint = ["flake8", "mypy", "docutils-stubs"]
-test = ["pytest", "html5lib"]
+test = ["html5lib", "pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-jsmath"
@@ -2165,7 +2165,7 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-test = ["pytest", "flake8", "mypy"]
+test = ["mypy", "flake8", "pytest"]
 
 [[package]]
 name = "sphinxcontrib-qthelp"
@@ -2176,8 +2176,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-lint = ["flake8", "mypy", "docutils-stubs"]
 test = ["pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-serializinghtml"
@@ -2188,8 +2188,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-lint = ["flake8", "mypy", "docutils-stubs"]
 test = ["pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "tabulate"
@@ -2371,8 +2371,8 @@ python-versions = ">=3.6"
 webencodings = ">=0.4"
 
 [package.extras]
-doc = ["sphinx", "sphinx-rtd-theme"]
-test = ["pytest", "pytest-cov", "pytest-flake8", "pytest-isort", "coverage"]
+test = ["coverage", "pytest-isort", "pytest-flake8", "pytest-cov", "pytest"]
+doc = ["sphinx-rtd-theme", "sphinx"]
 
 [[package]]
 name = "toml"
@@ -2594,1633 +2594,210 @@ testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-
 [metadata]
 lock-version = "1.1"
 python-versions = ">=3.7.1,<3.11"
-content-hash = "c7f49e1bc1b3d3d1bf134ac459b201d26821aba9affe62c50777fb7877aec08a"
+content-hash = "b17f89986d8e70f5b9071587cd3ac4a5c50892ed03e1dd0b0e2d47bf1b01b7dc"
 
 [metadata.files]
 absl-py = []
-aiosignal = [
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-    {file = "aiosignal-1.2.0.tar.gz", hash = "sha256:78ed67db6c7b7ced4f98e495e572106d5c432a93e1ddd1bf475e1dc05f5b7df2"},
-]
-alabaster = [
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-]
+aiosignal = []
+alabaster = []
 aliby-agora = []
-aliby-baby = [
-    {file = "aliby-baby-0.1.13.tar.gz", hash = "sha256:aa1d3ff3223fd2d0f754c1c0b25dee519d332dbaae51f30fba4b509310de1a1b"},
-    {file = "aliby_baby-0.1.13-py3-none-any.whl", hash = "sha256:935800fe57c485026c84137c173b5129daa51ca64ea7007ce9953d33cff87ef0"},
-]
+aliby-baby = []
 aliby-post = []
-appdirs = [
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-]
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 zipp = []
diff --git a/pyproject.toml b/pyproject.toml
index ff478c77..237b1c25 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "aliby"
-version = "0.1.36"
+version = "0.1.37"
 description = "Process and analyse live-cell imaging data"
 authors = ["Alan Munoz <alan.munoz@ed.ac.uk>"]
 packages = [
@@ -26,7 +26,7 @@ imageio = "2.8.0"
 omero-py = ">=5.6.2" # contact omero server
 aliby-agora = "^0.2.30"
 aliby-baby = "^0.1.13"
-aliby-post = "^0.1.32"
+aliby-post = "^0.1.34"
 p-tqdm = "^1.3.3" # Parallel progress bars
 xmltodict = "^0.13.0" # read ome-tiff metadata
 zeroc-ice = {version="3.6.5"} # networking interface, slow to build
-- 
GitLab