diff --git a/poetry.lock b/poetry.lock
index 003d3f75604990147e3e271dd3813567b5dd0bb7..852598bc29d8c32b5638602c57496bf53afd3ac8 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -259,11 +259,11 @@ python-versions = "*"
[[package]]
name = "certifi"
-version = "2021.10.8"
+version = "2022.5.18"
description = "Python package for providing Mozilla's CA Bundle."
category = "main"
optional = false
-python-versions = "*"
+python-versions = ">=3.5"
[[package]]
name = "charset-normalizer"
@@ -484,7 +484,7 @@ scipy = ">=1.7.3,<2.0.0"
[[package]]
name = "google-api-core"
-version = "2.7.3"
+version = "2.8.0"
description = "Google API client core library"
category = "main"
optional = false
@@ -944,6 +944,21 @@ category = "main"
optional = false
python-versions = ">=3.5"
+[[package]]
+name = "numpydoc"
+version = "1.3.1"
+description = "Sphinx extension to support docstrings in Numpy format"
+category = "dev"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+Jinja2 = ">=2.10"
+sphinx = ">=3.0"
+
+[package.extras]
+testing = ["pytest", "pytest-cov", "matplotlib"]
+
[[package]]
name = "nvidia-ml-py3"
version = "7.352.0"
@@ -1288,8 +1303,8 @@ pyasn1 = ">=0.4.6,<0.5.0"
[[package]]
name = "pydantic"
-version = "1.9.0"
-description = "Data validation and settings management using python 3.6 type hinting"
+version = "1.9.1"
+description = "Data validation and settings management using python type hints"
category = "main"
optional = false
python-versions = ">=3.6.1"
@@ -1993,7 +2008,7 @@ testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-
[metadata]
lock-version = "1.1"
python-versions = ">=3.7.1,<3.11"
-content-hash = "b08f651c8e56e1fedb63854466a00e0ec6e5d4d43d6406d620b9bfef26dd66fa"
+content-hash = "f9ee341dcb5c812f3112752cb5234c62a73c320a20a048b2e000d45efd5c6a7d"
[metadata.files]
absl-py = [
@@ -2168,8 +2183,8 @@ catch22 = [
{file = "catch22-0.2.0.tar.gz", hash = "sha256:f8e1382ec6db256ee5be83802334bf03d1b951ba85fa859fe537004bc07a127b"},
]
certifi = [
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- {file = "certifi-2021.10.8.tar.gz", hash = "sha256:78884e7c1d4b00ce3cea67b44566851c4343c120abd683433ce934a68ea58872"},
+ {file = "certifi-2022.5.18-py3-none-any.whl", hash = "sha256:8d15a5a7fde18536a249c49e07e8e462b8fc13de21b3c80e8a68315dfa227c99"},
+ {file = "certifi-2022.5.18.tar.gz", hash = "sha256:6ae10321df3e464305a46e997da41ea56c1d311fb9ff1dd4e04d6f14653ec63a"},
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{file = "charset-normalizer-2.0.12.tar.gz", hash = "sha256:2857e29ff0d34db842cd7ca3230549d1a697f96ee6d3fb071cfa6c7393832597"},
@@ -2295,8 +2310,8 @@ gaussianprocessderivatives = [
{file = "gaussianprocessderivatives-0.1.5.tar.gz", hash = "sha256:3bd2142668a0d9b8876ba1a15a406a7f9bcbb8564547a7027a9839024dd81838"},
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google-api-core = [
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- {file = "google_api_core-2.7.3-py3-none-any.whl", hash = "sha256:bb40d2d6412c77c367943b88d08323091d724deaea96892fff4a1ebd06f6e5be"},
+ {file = "google-api-core-2.8.0.tar.gz", hash = "sha256:065bb8e11c605fd232707ae50963dc1c8af5b3c95b4568887515985e6c1156b3"},
+ {file = "google_api_core-2.8.0-py3-none-any.whl", hash = "sha256:1b9f59236ce1bae9a687c1d4f22957e79a2669e53d032893f6bf0fca54f6931d"},
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google-auth = [
{file = "google-auth-1.35.0.tar.gz", hash = "sha256:b7033be9028c188ee30200b204ea00ed82ea1162e8ac1df4aa6ded19a191d88e"},
@@ -2829,6 +2844,10 @@ numpy = [
{file = "numpy-1.18.5-cp38-cp38-win_amd64.whl", hash = "sha256:3dd6823d3e04b5f223e3e265b4a1eae15f104f4366edd409e5a5e413a98f911f"},
{file = "numpy-1.18.5.zip", hash = "sha256:34e96e9dae65c4839bd80012023aadd6ee2ccb73ce7fdf3074c62f301e63120b"},
]
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+ {file = "numpydoc-1.3.1.tar.gz", hash = "sha256:349ff29e00a5caf119141967e579f8f17b24d41c46740b13ea4e8dba9971b20f"},
+]
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@@ -3141,41 +3160,41 @@ pyasn1-modules = [
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+ {file = "pydantic-1.9.1-py3-none-any.whl", hash = "sha256:4988c0f13c42bfa9ddd2fe2f569c9d54646ce84adc5de84228cfe83396f3bd58"},
+ {file = "pydantic-1.9.1.tar.gz", hash = "sha256:1ed987c3ff29fff7fd8c3ea3a3ea877ad310aae2ef9889a119e22d3f2db0691a"},
]
pygments = [
{file = "Pygments-2.12.0-py3-none-any.whl", hash = "sha256:dc9c10fb40944260f6ed4c688ece0cd2048414940f1cea51b8b226318411c519"},
diff --git a/pyproject.toml b/pyproject.toml
index f7f13fdb32a311ce826d170e2c0c56bf0f5fffe3..56ff41428a4d20a495e77be34d27b3e91813c436 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -15,13 +15,11 @@ dask = "^2021.12.0"
pathos = "^0.2.8"
tqdm = "^4.62.3"
scikit-learn = "0.22.2.post1"
-# more-itertools = "^8.12.0"
py-find-1st = "^1.1.5"
scikit-image = ">=0.18.1"
opencv-python = "*"
requests-toolbelt = "^0.9.1"
h5py = "2.10"
-# tables = "^3.6.1"
imageio = "2.8.0"
omero-py = ">=5.6.2"
zeroc-ice = "3.6.5"
@@ -38,6 +36,7 @@ black = "^22.3.0"
Sphinx = "^4.3.2"
pytest = "^6.2.5"
mypy = "^0.930"
+numpydoc = "^1.3.1"
[build-system]
requires = ["setuptools", "poetry-core>=1.0.0"]