From 1a23372a1e2458d9f5ff93468854ac846c73a98d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <alan.munoz@ed.ac.uk>
Date: Wed, 15 Mar 2023 13:44:19 +0000
Subject: [PATCH] chore(pyproject): update sync tomlock with venv
---
poetry.lock | 54 +++++++++++++++++++++++++-------------------------
pyproject.toml | 4 +---
2 files changed, 28 insertions(+), 30 deletions(-)
diff --git a/poetry.lock b/poetry.lock
index ae0e44b2..b1a26c96 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1201,19 +1201,19 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc
[[package]]
name = "filelock"
-version = "3.9.0"
+version = "3.9.1"
description = "A platform independent file lock."
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
- {file = "filelock-3.9.0-py3-none-any.whl", hash = "sha256:f58d535af89bb9ad5cd4df046f741f8553a418c01a7856bf0d173bbc9f6bd16d"},
- {file = "filelock-3.9.0.tar.gz", hash = "sha256:7b319f24340b51f55a2bf7a12ac0755a9b03e718311dac567a0f4f7fabd2f5de"},
+ {file = "filelock-3.9.1-py3-none-any.whl", hash = "sha256:4427cdda14a1c68e264845142842d6de2d0fa2c15ba31571a3d9c9a1ec9d191c"},
+ {file = "filelock-3.9.1.tar.gz", hash = "sha256:e393782f76abea324dee598d2ea145b857a20df0e0ee4f80fcf35e72a341d2c7"},
]
[package.extras]
-docs = ["furo (>=2022.12.7)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.5)"]
-testing = ["covdefaults (>=2.2.2)", "coverage (>=7.0.1)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-timeout (>=2.1)"]
+docs = ["furo (>=2022.12.7)", "sphinx (>=6.1.3)", "sphinx-autodoc-typehints (>=1.22,!=1.23.4)"]
+testing = ["covdefaults (>=2.3)", "coverage (>=7.2.1)", "pytest (>=7.2.2)", "pytest-cov (>=4)", "pytest-timeout (>=2.1)"]
[[package]]
name = "flake8"
@@ -3337,14 +3337,14 @@ test = ["ipykernel", "ipython", "ipywidgets", "nbconvert (>=7.0.0)", "pytest (>=
[[package]]
name = "nbconvert"
-version = "7.2.9"
+version = "7.2.10"
description = "Converting Jupyter Notebooks"
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
- {file = "nbconvert-7.2.9-py3-none-any.whl", hash = "sha256:495638c5e06005f4a5ce828d8a81d28e34f95c20f4384d5d7a22254b443836e7"},
- {file = "nbconvert-7.2.9.tar.gz", hash = "sha256:a42c3ac137c64f70cbe4d763111bf358641ea53b37a01a5c202ed86374af5234"},
+ {file = "nbconvert-7.2.10-py3-none-any.whl", hash = "sha256:e41118f81698d3d59b3c7c2887937446048f741aba6c367c1c1a77810b3e2d08"},
+ {file = "nbconvert-7.2.10.tar.gz", hash = "sha256:8eed67bd8314f3ec87c4351c2f674af3a04e5890ab905d6bd927c05aec1cf27d"},
]
[package.dependencies]
@@ -3916,14 +3916,14 @@ ppft = ">=1.7.6.5"
[[package]]
name = "pathspec"
-version = "0.11.0"
+version = "0.11.1"
description = "Utility library for gitignore style pattern matching of file paths."
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
- {file = "pathspec-0.11.0-py3-none-any.whl", hash = "sha256:3a66eb970cbac598f9e5ccb5b2cf58930cd8e3ed86d393d541eaf2d8b1705229"},
- {file = "pathspec-0.11.0.tar.gz", hash = "sha256:64d338d4e0914e91c1792321e6907b5a593f1ab1851de7fc269557a21b30ebbc"},
+ {file = "pathspec-0.11.1-py3-none-any.whl", hash = "sha256:d8af70af76652554bd134c22b3e8a1cc46ed7d91edcdd721ef1a0c51a84a5293"},
+ {file = "pathspec-0.11.1.tar.gz", hash = "sha256:2798de800fa92780e33acca925945e9a19a133b715067cf165b8866c15a31687"},
]
[[package]]
@@ -4535,14 +4535,14 @@ tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
[[package]]
name = "pyright"
-version = "1.1.298"
+version = "1.1.299"
description = "Command line wrapper for pyright"
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
- {file = "pyright-1.1.298-py3-none-any.whl", hash = "sha256:b492371519706459324eb2b468e2f57ae943568469b5353dbd2e44b281677198"},
- {file = "pyright-1.1.298.tar.gz", hash = "sha256:94a26bf56ba4eef582dffa61be20aa913db3096f4ee102c4c86592f0bced857d"},
+ {file = "pyright-1.1.299-py3-none-any.whl", hash = "sha256:f34dfd0c2fcade34f9878b1fc69cb9456476dc78227e0a2fa046107ec55c0235"},
+ {file = "pyright-1.1.299.tar.gz", hash = "sha256:b3a9a6affa1252c52793e8663ade59ff966f8495ecfad6328deffe59cfc5a9a9"},
]
[package.dependencies]
@@ -5063,14 +5063,14 @@ tune = ["pandas", "requests", "tabulate", "tensorboardX (>=1.9)"]
[[package]]
name = "readchar"
-version = "4.0.3"
+version = "4.0.4"
description = "Library to easily read single chars and key strokes"
category = "dev"
optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
files = [
- {file = "readchar-4.0.3-py3-none-any.whl", hash = "sha256:3d4351c563aba4ae7d4e0b821a234d48bc748f45b74e3f38b50cba3857b57acb"},
- {file = "readchar-4.0.3.tar.gz", hash = "sha256:1d920d0e9ab76ec5d42192a68d15af2562663b5dfbf4a67cf9eba520e1ca57e6"},
+ {file = "readchar-4.0.4-py3-none-any.whl", hash = "sha256:274e08aebb64542362ebf0b06cfa8e7ba7595dc419b812c19d6bc17c2d4fa4bb"},
+ {file = "readchar-4.0.4.tar.gz", hash = "sha256:79b1d27eb9160568102219c872fef8d13bf7f16094c09ee287f620f6f2a7c031"},
]
[package.dependencies]
@@ -5578,18 +5578,18 @@ test = ["html5lib", "pytest"]
[[package]]
name = "sphinxcontrib-jquery"
-version = "2.0.0"
+version = "4.1"
description = "Extension to include jQuery on newer Sphinx releases"
category = "dev"
optional = false
python-versions = ">=2.7"
files = [
- {file = "sphinxcontrib-jquery-2.0.0.tar.gz", hash = "sha256:8fb65f6dba84bf7bcd1aea1f02ab3955ac34611d838bcc95d4983b805b234daa"},
- {file = "sphinxcontrib_jquery-2.0.0-py3-none-any.whl", hash = "sha256:ed47fa425c338ffebe3c37e1cdb56e30eb806116b85f01055b158c7057fdb995"},
+ {file = "sphinxcontrib-jquery-4.1.tar.gz", hash = "sha256:1620739f04e36a2c779f1a131a2dfd49b2fd07351bf1968ced074365933abc7a"},
+ {file = "sphinxcontrib_jquery-4.1-py2.py3-none-any.whl", hash = "sha256:f936030d7d0147dd026a4f2b5a57343d233f1fc7b363f68b3d4f1cb0993878ae"},
]
[package.dependencies]
-setuptools = "*"
+Sphinx = ">=1.8"
[[package]]
name = "sphinxcontrib-jsmath"
@@ -6419,18 +6419,18 @@ watchdog = ["watchdog"]
[[package]]
name = "wheel"
-version = "0.38.4"
+version = "0.40.0"
description = "A built-package format for Python"
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
- {file = "wheel-0.38.4-py3-none-any.whl", hash = "sha256:b60533f3f5d530e971d6737ca6d58681ee434818fab630c83a734bb10c083ce8"},
- {file = "wheel-0.38.4.tar.gz", hash = "sha256:965f5259b566725405b05e7cf774052044b1ed30119b5d586b2703aafe8719ac"},
+ {file = "wheel-0.40.0-py3-none-any.whl", hash = "sha256:d236b20e7cb522daf2390fa84c55eea81c5c30190f90f29ae2ca1ad8355bf247"},
+ {file = "wheel-0.40.0.tar.gz", hash = "sha256:cd1196f3faee2b31968d626e1731c94f99cbdb67cf5a46e4f5656cbee7738873"},
]
[package.extras]
-test = ["pytest (>=3.0.0)"]
+test = ["pytest (>=6.0.0)"]
[[package]]
name = "widgetsnbextension"
@@ -6715,4 +6715,4 @@ omero = ["omero-py"]
[metadata]
lock-version = "2.0"
python-versions = ">=3.8, <3.11"
-content-hash = "70c370934622f7d8b63b28b33cdfe2f5076e6a94f364c40f0ee1ed0667543c2c"
+content-hash = "d4e111afae2f7b8c182eeeb7c0ce36ef4b5c0f14ec03d90fb4aeb6c94c2bdcb6"
diff --git a/pyproject.toml b/pyproject.toml
index 5a82cebd..f524152c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -44,11 +44,11 @@ scikit-image = ">=0.18.1"
tqdm = "^4.62.3" # progress bars
xmltodict = "^0.13.0" # read ome-tiff metadata
zarr = "^2.14.0"
+GitPython = "^3.1.27"
# Networking
omero-py = { version = ">=5.6.2", optional = true } # contact omero server
-GitPython = "^3.1.27"
[tool.poetry.extras]
omero = [ "omero-py" ]
@@ -84,8 +84,6 @@ grid-strategy = "^0.0.1"
readchar = "^4.0.3"
ipdb = "^0.13.11"
-
-
[tool.poetry.group.docs]
optional = true
--
GitLab