From 1fb366b5475bb5c5048ce87c0dcac5d9909e0cf8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Wed, 29 Jun 2022 18:34:12 +0100
Subject: [PATCH] style(imageViewer): cleanup comments
---
aliby/utils/imageViewer.py | 64 --------------------------------------
1 file changed, 64 deletions(-)
diff --git a/aliby/utils/imageViewer.py b/aliby/utils/imageViewer.py
index 5d7a5d44..39b0790e 100644
--- a/aliby/utils/imageViewer.py
+++ b/aliby/utils/imageViewer.py
@@ -190,8 +190,6 @@ class remoteImageViewer:
if channels and not isinstance(channels, t.Collection):
channels = [channels]
- # if z and isinstance(z, t.Collection):
- # z = list(z)
if z is None:
z = 0
@@ -257,13 +255,6 @@ class remoteImageViewer:
)
return out, imgs
- # def plot_labelled_zstacks(
- # self, trap_id, channels, trange, z=None, **kwargs
- # ):
- # # if z is None:
- # # z =
- # out, images = self.get_images(trap_id, trange, channels, z=z, **kwargs)
-
def plot_labelled_trap(
self,
trap_id: int,
@@ -404,61 +395,6 @@ class remoteImageViewer:
else:
plt.show()
- # def plot_labelled_trap(
- # self,
- # trap_id: int,
- # trange: t.Union[range, t.Collection[int]],
- # ncols: int,
- # remove_axis: bool = False,
- # savefile: str = None,
- # skip_outlines: bool = False,
- # **kwargs,
- # ):
- # """
- # Wrapper to plot a single trap over time
-
- # Parameters
- # ---------
- # :trap_id: int trap identification
- # :trange: Collection or Range list of time points to fetch
- # """
- # nrows = len(trange) // ncols
- # width = self.tiler.tile_size * ncols
- # out, img = self.get_labelled_trap(trap_id, trange, **kwargs)
-
- # # dilation makes outlines easier to see
- # out = dilation(out).astype(float)
- # out[out == 0] = np.nan
-
- # # interpolation_kwargs = {""}
-
- # custom_imshow(
- # concat_pad(img),
- # cmap="Greys_r",
- # )
- # if not skip_outlines:
- # custom_imshow(
- # concat_pad(out),
- # cmap="Set1",
- # )
-
- # bbox_inches = None
- # if remove_axis:
- # plt.axis("off")
- # bbox_inches = "tight"
-
- # else:
- # plt.yticks(
- # ticks=[self.tiler.tile_size * (i + 0.5) for i in range(nrows)],
- # labels=[trange[0] + ncols * i for i in range(nrows)],
- # )
-
- # if not savefile:
- # plt.show()
- # else:
- # if np.any(out):
- # plt.savefig(savefile, bbox_inches=bbox_inches)
-
def concat_pad(a: np.array, width, nrows):
"""
--
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