From 29a04f3505cea8c95a7220753def0325795c5d7a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Wed, 9 Feb 2022 11:14:15 +0000
Subject: [PATCH] outcomment foci fun

---
 extraction/core/functions/cell.py | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/extraction/core/functions/cell.py b/extraction/core/functions/cell.py
index f8b48a11..c6e7425b 100644
--- a/extraction/core/functions/cell.py
+++ b/extraction/core/functions/cell.py
@@ -84,13 +84,13 @@ def std(cell_mask, trap_image):
 
 
 ## Specialised extraction functions
-def foci_area_otsu(cell_mask, trap_image):
-    # Use otsu threshold to calculate the are of high-expression blobs inside a cell.
-    cell_pixels = trap_image[cell_mask]
-    cell_pixels = cell_pixels[~np.isnan(cell_pixels)]
-    threshold = threshold_otsu(cell_pixels)
+# def foci_area_otsu(cell_mask, trap_image):
+#     # Use otsu threshold to calculate the are of high-expression blobs inside a cell.
+#     cell_pixels = trap_image[cell_mask]
+#     cell_pixels = cell_pixels[~np.isnan(cell_pixels)]
+#     threshold = threshold_otsu(cell_pixels)
 
-    return np.sum(cell_pixels > threshold)
+#     return np.sum(cell_pixels > threshold)
 
 
 def k2_top_median(cell_mask, trap_image):
-- 
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