diff --git a/extraction/examples/argo.py b/extraction/examples/argo.py deleted file mode 100644 index 572412f5557a1724287699cb65a2db2e9855a090..0000000000000000000000000000000000000000 --- a/extraction/examples/argo.py +++ /dev/null @@ -1,39 +0,0 @@ -# Example of argo experiment explorer -from aliby.utils.argo import Argo -from extraction.core.extractor import Extractor -from extraction.core.functions.defaults import get_params -from extraction.core.parameters import Parameters - -argo = Argo() -argo.load() -# argo.channels("GFP") -argo.tags(["Alan"]) -argo.complete() -# argo.cExperiment() -# argo.tiler_cells() - -# params = Parameters(**get_params("batman_ph_dual_fast")) - - -# def try_extract(d): -# try: -# params = Parameters(**get_params("batman_ph_dual_fast")) -# ext = Extractor(params, source=d.getId()) -# ext.load_tiler_cells() -# ext.process_experiment() -# print(d.getId(), d.getName(), "Experiment processed") -# return True -# except: -# print(d.getId(), d.getName(), "Experiment not processed") - -# return False - - -# from multiprocessing.dummy import Pool as ThreadPool - -# pool = ThreadPool(4) -# results = pool.map(try_extract, argo.dsets) -# import pickle - -# with open("results.pkl", "wb") as f: -# pickle.dump(results, f) diff --git a/extraction/examples/test_pipeline.py b/extraction/examples/test_pipeline.py deleted file mode 100644 index a69b12c876661caa69ad660d602c36c9a89e4a28..0000000000000000000000000000000000000000 --- a/extraction/examples/test_pipeline.py +++ /dev/null @@ -1,28 +0,0 @@ -from pathlib import Path - -import numpy as np - -from extraction.core.extractor import Extractor -from extraction.core.functions.defaults import get_params -from extraction.core.parameters import Parameters - -params = Parameters(**get_params("batman_ph_dual_fast")) -# ext = Extractor(params, source=19918) # 19831 -ext = Extractor(params, source=19831) -ext.load_tiler() -self = ext -# s=self.extract_exp(tree={'general':{None:['area']}, 'GFPFast':{np.maximum:['median','mean']}},poses=self.expt.positions[:2], tps=[0,1], stg='df') -s = self.extract_exp() -# # import cProfile -# # profile = cProfile.Profile() -# # profile.enable() -# # ext.change_position(ext.expt.positions[1]) -# # tracks = self.extract_pos( -# # tree={('general'):{None: # Other metrics can be used -# # [tidy_metric]}})#['general',None,'area'] - -# # profile.disable() -# # import pstats -# # ps = pstats.Stats(profile) -# # ps.sort_stats('cumulative') -# # ps.print_stats()