From 381bc5c6dff2cef958158595eb9064abf011b9f7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Wed, 9 Feb 2022 11:15:24 +0000
Subject: [PATCH] update default ES parameters
---
aliby/pipeline.py | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/aliby/pipeline.py b/aliby/pipeline.py
index 7e08f34f..3865c278 100644
--- a/aliby/pipeline.py
+++ b/aliby/pipeline.py
@@ -90,8 +90,9 @@ class PipelineParameters(ParametersABC):
filter="",
earlystop=dict(
min_tp=100,
- thresh_pos_clogged=0.3,
- thresh_trap_clogged=7,
+ thresh_pos_clogged=0.4,
+ thresh_trap_ncells=8,
+ thresh_trap_area=0.9,
ntps_to_eval=5,
),
)
--
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